Browse Element(s) Details


OsAffx.16592.1.S1_at

Description tigr:9635.m03672
TID=OsAffx.16592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3708011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37030Os.2248.1.S1_at11/117+22182713..22185239Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
LOC_Os07g37040Os.13496.1.S1_at11/117+22185662..22187362PB1 domain containing protein, expressed
LOC_Os07g37050NANA7+22198721..22200436hypothetical protein
LOC_Os07g37060OsAffx.5557.1.S1_at11/117+22201299..22201943expressed protein
LOC_Os07g37070NANA7+22203895..22204634hypothetical protein
LOC_Os07g37080OsAffx.16592.1.S1_at11/117+22209596..22211455F-box domain containing protein
LOC_Os07g37090Os.22408.1.S1_at11/117+22220606..22221642Ribosome inactivating protein, expressed
LOC_Os07g37100Os.8375.1.S1_at11/117+22229333..22232900equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37110Os.53971.1.S1_at11/117+22235127..22238625equilibrative nucleoside transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16592.1.S1_at--791--7831Chr07:22210286..22210310 (25 bp)
GGTAGACACCTATCCTGAGAATGAC
LOC_Os07g37080
OsAffx.16592.1.S1_at--906--5191Chr07:22210243..22210267 (25 bp)
GAATTCGGAAGGCACTTTGACACAG
LOC_Os07g37080
OsAffx.16592.1.S1_at--1147--651Chr07:22210096..22210120 (25 bp)
ATGCAATGCCAGGAACTCTTTTATT
LOC_Os07g37080
OsAffx.16592.1.S1_at--68--431Chr07:22210028..22210052 (25 bp)
ATCATCTAGCAGAGCGGTGGCCTAT
LOC_Os07g37080
OsAffx.16592.1.S1_at--808--7711Chr07:22210013..22210037 (25 bp)
GGTGGCCTATCATCTCAATAGCTCA
LOC_Os07g37080
OsAffx.16592.1.S1_at--334--4711Chr07:22209772..22209796 (25 bp)
GCTGGATTTTCGAAACGGCACCATA
LOC_Os07g37080
OsAffx.16592.1.S1_at--980--6491Chr07:22209747..22209771 (25 bp)
GATATGGCATAGGTGACCCAAGCAT
LOC_Os07g37080
OsAffx.16592.1.S1_at--166--8611Chr07:22209722..22209746 (25 bp)
TGGTGTTGGTTCTACAACCGGCACA
LOC_Os07g37080
OsAffx.16592.1.S1_at--441--2211Chr07:22209709..22209733 (25 bp)
ACAACCGGCACATTTGAGGCGCATG
LOC_Os07g37080
OsAffx.16592.1.S1_at--733--4071Chr07:22209673..22209697 (25 bp)
CGAGCCGATACATACTTCAAGTTAC
LOC_Os07g37080
OsAffx.16592.1.S1_at--710--6771Chr07:22209653..22209677 (25 bp)
GTTACTCTCTGTTGTCTCAAATCAT
LOC_Os07g37080
Target Sequence 
GGTAGACACCTATCCTGAGAATGACTATCAAGCGGAAGAAGACGAATTCGGAAGGCACTTTGACACAGATAGCAACTACT
ACGATGCAGAAGAATATGGATGGGCTTCTGATGAAGATGGCGAATGCCATAGTGAATGTAACAACAAATATGGGGAAGAT
GAACTTTACAAAGTGGATAAGCTTTACAATATGCAATGCCAGGAACTCTTTTATTTCTTTGGATTTCACCCTTACAGAGA
TGTTGTTTTCTTACATGTATCATCTAGCAGAGCGGTGGCCTATCATCTCAATAGCTCAAAGGTTCGAGACTTAGGTGTTG
GTTGGGAACAGCACATTAGTGCTGGATTTTCGAAACGGCACCATAGATATGGCATAGGTGACCCAAGCATTGGTGTTGGT
TCTACAACCGGCACATTTGAGGCGCATGCGAGGGAAAATCGAGCCGATACATACTTCAAGTTACTCTCTGTTGTCTCAAA
TCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis