Browse Element(s) Details


OsAffx.16619.1.S1_at

Description tigr:9635.m03873
TID=OsAffx.16619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3887011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38840Os.16563.1.S1_at11/117+23297351..23300519pre-mRNA processing protein PRP39, putative, expressed
LOC_Os07g38850Os.8566.1.S1_at11/117+23300758..23308009UbiA prenyltransferase family protein, putative, expressed
LOC_Os07g38860NANA7+23312788..23317460indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os07g38870OsAffx.16619.1.S1_at11/117+23320550..23321350hypothetical protein
LOC_Os07g38880NANA7+23322811..23323176hypothetical protein
LOC_Os07g38890Os.54822.1.S1_at11/117+23323505..23325533indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g38900Os.28814.2.S1_x_at1/117+23326517..23327484hypothetical protein
LOC_Os07g38910OsAffx.5571.1.S1_at11/117+23328327..23329152histidine kinase 1, putative, expressed
LOC_Os07g38930OsAffx.5572.1.S1_at10/117+23342395..23346718Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16619.1.S1_at--53--471Chr07:23321276..23321300 (25 bp)
ATCTCTCGCATCGAACGACGGCGAG
LOC_Os07g38870
OsAffx.16619.1.S1_at--766--8391Chr07:23321237..23321261 (25 bp)
GGCGCGCTACCGTGTGGATGGCGAC
LOC_Os07g38870
OsAffx.16619.1.S1_at--945--8351Chr07:23320723..23321236 (25 bp)
GGCGGCACGGCGACCACTCGACAAG
LOC_Os07g38870
OsAffx.16619.1.S1_at--1145--8371Chr07:23320715..23320739 (25 bp)
GGCGACCACTCGACAAGTCGACATC
LOC_Os07g38870
OsAffx.16619.1.S1_at--77--7231Chr07:23320699..23320723 (25 bp)
GTCGACATCGACTGCATACACGGCA
LOC_Os07g38870
OsAffx.16619.1.S1_at--243--2231Chr07:23320644..23320668 (25 bp)
ACAAGGCCGCCATGCAGGAGTGTCA
LOC_Os07g38870
OsAffx.16619.1.S1_at--404--651Chr07:23320633..23320657 (25 bp)
ATGCAGGAGTGTCATGCGTCGCCAC
LOC_Os07g38870
OsAffx.16619.1.S1_at--432--611Chr07:23320620..23320644 (25 bp)
ATGCGTCGCCACCTCCAGCAAATTA
LOC_Os07g38870
OsAffx.16619.1.S1_at--563--1731Chr07:23320610..23320634 (25 bp)
ACCTCCAGCAAATTACTTCAAGAAT
LOC_Os07g38870
OsAffx.16619.1.S1_at--869--5231Chr07:23320589..23320613 (25 bp)
GAATAAGGCCGACTACAATGCTGCT
LOC_Os07g38870
OsAffx.16619.1.S1_at--816--2951Chr07:23320585..23320609 (25 bp)
AAGGCCGACTACAATGCTGCTGCAG
LOC_Os07g38870
Target Sequence 
ATCTCTCGCATCGAACGACGGCGAGTCCGGGCCAGGGATGGCGCGCTACCGTGTGGATGGCGACGGCGGCACGGCGACCA
CTCGACAAGTCGACATCGACTGCATACACGGCACCACCACCAGCAAGAGGGCCGCGGGGAAGGACAAGGCCGCCATGCAG
GAGTGTCATGCGTCGCCACCTCCAGCAAATTACTTCAAGAATAAGGCCGACTACAATGCTGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis