Browse Element(s) Details


OsAffx.16867.1.S1_at

Description tigr:9636.m00639
TID=OsAffx.16867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0704011/11expressed protein
LOC_Os01g239701/11serine/threonine kinase, putative
LOC_Os06g081201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07010OsAffx.16865.1.S1_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07010OsAffx.16865.1.S1_x_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07020OsAffx.29071.1.S1_at11/118+3930047..3930877hypothetical protein
LOC_Os08g07030OsAffx.16866.1.S1_at11/118+3933836..3934069hypothetical protein
LOC_Os08g07040OsAffx.16867.1.S1_at11/118+3934777..3938452expressed protein
LOC_Os08g07050NANA8+3939587..3940141hypothetical protein
LOC_Os08g07060Os.51132.1.S1_at11/118+3942695..3944788expressed protein
LOC_Os08g07070OsAffx.5729.1.S1_at11/118+3945013..3945976expressed protein
LOC_Os08g07080Os.26820.1.A1_s_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07080Os.26820.1.A1_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07090OsAffx.5731.1.S1_at10/118+3960134..3963366hypothetical protein
LOC_Os08g07090OsAffx.22759.2.S1_at1/118+3960134..3963366hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16867.1.S1_at--499--4971Chr08:3935282..3935306 (25 bp)
GCATCGCCGGGATCGAGTTCGACGC
LOC_Os08g07040
OsAffx.16867.1.S1_at--640--3831Chr08:3935252..3935276 (25 bp)
CTGCGACGCTGAAGCTCCCGGTGAT
LOC_Os08g07040
OsAffx.16867.1.S1_at--352--5151Chr08:3935216..3935240 (25 bp)
GCAACACGGAGACGGTCCTCCGCAA
LOC_Os08g07040
OsAffx.16867.1.S1_at--576--9291Chr08:3935198..3935222 (25 bp)
TCCGCAACCTGGTCGCGTACGAGGC
LOC_Os08g07040
OsAffx.16867.1.S1_at--23--9131Chr08:3935150..3935174 (25 bp)
TGCTGGCGCGCTACACGGAGCTGAT
LOC_Os08g07040
OsAffx.16867.1.S1_at--525--1933Chr06:3942080..3942104 (25 bp)
ACGGAGCTGATGAACGGCATCATCG
LOC_Os06g08120
OsAffx.16867.1.S1_at--866--691Chr08:3934917..3934941 (25 bp)
ATGATGAAGCGCTACGTGTTCCGGT
LOC_Os08g07040
OsAffx.16867.1.S1_at--1075--2651Chr08:3934911..3934935 (25 bp)
AAGCGCTACGTGTTCCGGTCGTGGC
LOC_Os08g07040
OsAffx.16867.1.S1_at--107--1391Chr08:3934835..3934859 (25 bp)
AGACCTTCTGCTCGGTGTACCAGTG
LOC_Os08g07040
OsAffx.16867.1.S1_at--24--1131Chr08:3934814..3934838 (25 bp)
AGTGCAACCGCTGGTTCGGCAACAT
LOC_Os08g07040
OsAffx.16867.1.S1_at--929--4211Chr08:3934807..3934831 (25 bp)
CCGCTGGTTCGGCAACATGCTGCAG
LOC_Os08g07040
Target Sequence 
GCATCGCCGGGATCGAGTTCGACGCCCCGGCTGCGACGCTGAAGCTCCCGGTGATCACCGTCGACGGCAACACGGAGACG
GTCCTCCGCAACCTGGTCGCGTACGAGGCGGTGGCCGTGCGCGGGCCGCTGGTGCTGGCGCGCTACACGGAGCTGATGAA
CGGCATCATCGACACGGCCAAGGACGTGAAGATCCTGAGGCAGAGCGGGGTGGTGGTGAACCGGATGAAGAGCGACGGCG
AGGCGGCGGAGATGTGGAACGGGATGTGCAGGGCGACGCGGCTGAGCAGGGTGCCGAGGCTGGACGGGGTGATCCGGGCG
GTGAACGAGCACCGGAGCAGGAGGGCGGCGGTTCGGCTGAGGAGGATGATGAAGCGCTACGTGTTCCGGTCGTGGCGGGT
GCTCACGCTGCTCGCCGCCGTCGTGCTGCTGCTCATGACGGCGCTGCAGACCTTCTGCTCGGTGTACCAGTGCAACCGCT
GGTTCGGCAACATGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis