Browse Element(s) Details


OsAffx.16892.1.S1_at

Description tigr:9636.m00766
TID=OsAffx.16892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:MLD14.24
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0816011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08140Os.47925.1.S2_at11/118+4625376..4632335D-mannose binding lectin family protein, expressed
LOC_Os08g08140OsAffx.16890.1.S1_x_at11/118+4625376..4632335D-mannose binding lectin family protein, expressed
LOC_Os08g08140Os.47925.1.S1_x_at10/118+4625376..4632335D-mannose binding lectin family protein, expressed
LOC_Os08g08150OsAffx.16891.1.S1_at11/118+4635122..4635837hypothetical protein
LOC_Os08g08160OsAffx.16892.1.S1_at11/118+4638954..4642364hypothetical protein
LOC_Os08g08170Os.26818.2.S1_at1/118+4642555..4646046transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180OsAffx.10637.3.S1_s_at11/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180OsAffx.10637.1.S1_s_at11/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180OsAffx.10637.4.S1_s_at11/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180Os.33878.1.S1_at6/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180Os.27102.1.S1_x_at1/118+4650960..4653671transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08190Os.6771.1.S1_s_at11/118+4666057..4669028expressed protein
LOC_Os08g08190Os.54967.1.S1_at1/118+4666057..4669028expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16892.1.S1_at--740--4611Chr08:4640886..4641299 (25 bp)
GCGAGCCTTGCAGCTAAGAGGGCAT
LOC_Os08g08160
OsAffx.16892.1.S1_at--71--1191Chr08:4640854..4640878 (25 bp)
AGTAGGAGACTCCAGCTCAATCATC
LOC_Os08g08160
OsAffx.16892.1.S1_at--552--5291Chr08:4640818..4640842 (25 bp)
GAAGGCTGATTCCACGCCACTAAAG
LOC_Os08g08160
OsAffx.16892.1.S1_at--440--2751Chr08:4640796..4640820 (25 bp)
AAGAAATCCAGAACCGGGACGCCAT
LOC_Os08g08160
OsAffx.16892.1.S1_at--828--5771Chr08:4640761..4640785 (25 bp)
GACGACCTTCAAGGCATGTGTCTAC
LOC_Os08g08160
OsAffx.16892.1.S1_at--660--3291Chr08:4640712..4640736 (25 bp)
CAAATGGTGATTGATTTCCTTCCAA
LOC_Os08g08160
OsAffx.16892.1.S1_at--1116--6511Chr08:4640700..4640724 (25 bp)
GATTTCCTTCCAATAAAGTTCCATG
LOC_Os08g08160
OsAffx.16892.1.S1_at--760--5091Chr08:4639920..4639944 (25 bp)
GCACTTAGTGCTCCTTACCTAAAGA
LOC_Os08g08160
OsAffx.16892.1.S1_at--574--1431Chr08:4639898..4639922 (25 bp)
AGAACAGGCAACAAGTGCCCCACTT
LOC_Os08g08160
OsAffx.16892.1.S1_at--757--1371Chr08:4639038..4639062 (25 bp)
AGACCTCACCGGAAGAGGGCTGTGC
LOC_Os08g08160
OsAffx.16892.1.S1_at--525--7231Chr08:4638986..4639010 (25 bp)
GTCGCCAGCGAGACGCCGGTCGATT
LOC_Os08g08160
Target Sequence 
GCGAGCCTTGCAGCTAAGAGGGCATTAGAAGGAGTAGGAGACTCCAGCTCAATCATCACGAAGAAGGCGAAGGCTGATTC
CACGCCACTAAAGAAATCCAGAACCGGGACGCCATCGCCATTGCCGACGACCTTCAAGGCATGTGTCTACATATATATAA
TATTTAATTTGTCCCAAATGGTGATTGATTTCCTTCCAATAAAGTTCCATGTGAGGAAAGAGAAGCTAGGGGACAGGGTC
ACAGCACTCCAACAACTAGTCTCCCCTTTTGGAAAGACGGACACGGCATCGGTGCTCCACGAGACAATCGAGTACATCAA
GTTCCTGCACGATCAAGTTGGTGCACTTAGTGCTCCTTACCTAAAGAACAGGCAACAAGTGCCCCACTTGAAGAACTCCA
CCGGCGTCGACAACGATGGCGGCGGCGGCGGCGGCGAGGCGACGGCGGCTAGCAAGAGAGACCTCACCGGAAGAGGGCTG
TGCCTGGTCCCGATATCGAGCACCTTCGCCGTCGCCAGCGAGACGCCGGTCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis