Browse Element(s) Details


OsAffx.16894.1.S1_at

Description tigr:9636.m00778
TID=OsAffx.16894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0827011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08260OsAffx.5747.1.S1_at11/118+4721424..4722716hypothetical protein
LOC_Os08g08270OsAffx.16894.1.S1_at11/118+4738062..4738325hypothetical protein
LOC_Os08g08279NANA8+4740883..4741286NA
LOC_Os08g08290OsAffx.5748.1.S1_at10/118+4744681..4747342hypothetical protein
LOC_Os08g08290OsAffx.12155.2.A1_at2/118+4744681..4747342hypothetical protein
LOC_Os08g08300NANA8+4751029..4754123transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08310Os.47463.1.S1_x_at6/118+4755641..4761656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08310Os.14491.2.S1_x_at4/118+4755641..4761656transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16894.1.S1_at--27--3511Chr08:4738136..4738160 (25 bp)
CATGGACGTGAGCAGAATGGACTTC
LOC_Os08g08270
OsAffx.16894.1.S1_at--43--7391Chr08:4738143..4738167 (25 bp)
GTGAGCAGAATGGACTTCGTGCCCA
LOC_Os08g08270
OsAffx.16894.1.S1_at--945--5931Chr08:4738145..4738169 (25 bp)
GAGCAGAATGGACTTCGTGCCCATT
LOC_Os08g08270
OsAffx.16894.1.S1_at--298--5291Chr08:4738150..4738174 (25 bp)
GAATGGACTTCGTGCCCATTCCCAT
LOC_Os08g08270
OsAffx.16894.1.S1_at--954--4371Chr08:4738204..4738228 (25 bp)
CCAAGCGAATCCAACCCAAGGAGTT
LOC_Os08g08270
OsAffx.16894.1.S1_at--13--2671Chr08:4738206..4738230 (25 bp)
AAGCGAATCCAACCCAAGGAGTTCG
LOC_Os08g08270
OsAffx.16894.1.S1_at--770--4651Chr08:4738237..4738261 (25 bp)
GCGTCGACCTCAGAGTGGCTCGAGT
LOC_Os08g08270
OsAffx.16894.1.S1_at--1100--7191Chr08:4738239..4738263 (25 bp)
GTCGACCTCAGAGTGGCTCGAGTTC
LOC_Os08g08270
OsAffx.16894.1.S1_at--227--1751Chr08:4738243..4738267 (25 bp)
ACCTCAGAGTGGCTCGAGTTCCCGG
LOC_Os08g08270
OsAffx.16894.1.S1_at--186--3431Chr08:4738247..4738271 (25 bp)
CAGAGTGGCTCGAGTTCCCGGCAGT
LOC_Os08g08270
OsAffx.16894.1.S1_at--729--9371Chr08:4738256..4738280 (25 bp)
TCGAGTTCCCGGCAGTGTGGAAGGA
LOC_Os08g08270
Target Sequence 
CATGGACGTGAGCAGAATGGACTTCGTGCCCATTCCCATCGTCGTCTCCACCCTCGTCGAGAACCACCCCAAGCGAATCC
AACCCAAGGAGTTCGCCCCCGGCGTCGACCTCAGAGTGGCTCGAGTTCCCGGCAGTGTGGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis