Browse Element(s) Details


OsAffx.16900.1.S1_at

Description tigr:9636.m00827
TID=OsAffx.16900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0874011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08710OsAffx.16899.1.S1_at10/118+5040389..5042264hypothetical protein
LOC_Os08g08720OsAffx.29169.1.S1_at8/118+5045569..5047893retrotransposon protein, putative, unclassified
LOC_Os08g08720OsAffx.29169.3.S1_at4/118+5045569..5047893retrotransposon protein, putative, unclassified
LOC_Os08g08730NANA8+5052608..5052937hypothetical protein
LOC_Os08g08740OsAffx.16900.1.S1_at11/118+5062292..5063296hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_x_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08760OsAffx.5755.1.S1_at11/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08760Os.57479.1.S1_x_at1/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08770NANA8+5077283..5083369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08780OsAffx.21897.5.S1_x_at4/118+5083681..5086621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08790OsAffx.16901.1.S1_at11/118+5088060..5089137Ubiquitin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16900.1.S1_at--562--3931Chr08:5062820..5062844 (25 bp)
CGGCGACCAGGGTACTCGGCGTCTT
LOC_Os08g08740
OsAffx.16900.1.S1_at--623--5851Chr08:5062816..5062840 (25 bp)
GACCAGGGTACTCGGCGTCTTCCAC
LOC_Os08g08740
OsAffx.16900.1.S1_at--475--2211Chr08:5062793..5062817 (25 bp)
ACAACCCGGTCAACCGCGAGCTGGA
LOC_Os08g08740
OsAffx.16900.1.S1_at--986--9711Chr08:5062784..5062808 (25 bp)
TCAACCGCGAGCTGGATCGCTTCAT
LOC_Os08g08740
OsAffx.16900.1.S1_at--2--4151Chr08:5062779..5062803 (25 bp)
CGCGAGCTGGATCGCTTCATCCCGA
LOC_Os08g08740
OsAffx.16900.1.S1_at--9--4091Chr08:5062745..5062769 (25 bp)
CGAGCTCGCTGCTATTCGGCGTGGA
LOC_Os08g08740
OsAffx.16900.1.S1_at--786--4791Chr08:5062742..5062766 (25 bp)
GCTCGCTGCTATTCGGCGTGGAGAA
LOC_Os08g08740
OsAffx.16900.1.S1_at--89--5972Chr02:18897752..18897776 (25 bp)
GAGAAGGACACTGCTGCCGCGGTCA
NONE
OsAffx.16900.1.S1_at--20--5312Chr02:18897754..18897778 (25 bp)
GAAGGACACTGCTGCCGCGGTCAAC
NONE
OsAffx.16900.1.S1_at--775--9031Chr08:5062638..5062662 (25 bp)
TGCAGCGCGCAGAGAAAGCGACCGC
LOC_Os08g08740
OsAffx.16900.1.S1_at--1037--4611Chr08:5062353..5062377 (25 bp)
GCGAGTCGGCGGTCAGAGTGGCCGC
LOC_Os08g08740
Target Sequence 
CGGCGACCAGGGTACTCGGCGTCTTCCACAACCCGGTCAACCGCGAGCTGGATCGCTTCATCCCGACCGCCGCCACGAGC
TCGCTGCTATTCGGCGTGGAGAAGGACACTGCTGCCGCGGTCAACCTTACCACCGGCGCGGTCGGGAACGAGGGCAGGAG
GAGGCATCGCCGCCGGGTGCGGTGCAGCGCGCAGAGAAAGCGACCGCGGAGTGCGCACGCTTTATGCGGAGCTCGGCAAG
ATGGTGGCACGGCGTCACCAGCGGCTATCGCGCTCCCTTCAGGCGCTCACTGTCCTCGCCGACCACCTTATCCTTGCCGC
TGTCGAGGATCGTCATGCCGGCCCTGCCCCAACCGCATCAATCCCCTTTCACCCGGCTGCCATTGGTCCCCAGCGACTCC
AAGAGCTCCACGATGTCGCCCATGGCGTGCGCGTGGTCGTCGGGGATGGACATGAACCGGAGCCGCGGCGAGTCGGCGGT
CAGAGTGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis