Browse Element(s) Details


OsAffx.16901.1.S1_at

Description tigr:9636.m00832
TID=OsAffx.16901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to polyubiquitin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0879011/11Ubiquitin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08740OsAffx.16900.1.S1_at11/118+5062292..5063296hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_x_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08760OsAffx.5755.1.S1_at11/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08760Os.57479.1.S1_x_at1/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08770NANA8+5077283..5083369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08780OsAffx.21897.5.S1_x_at4/118+5083681..5086621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08790OsAffx.16901.1.S1_at11/118+5088060..5089137Ubiquitin family protein
LOC_Os08g08800OsAffx.29108.1.S1_at11/118+5090474..5093058hypothetical protein
LOC_Os08g08810OsAffx.29109.1.S1_at11/118+5101268..5101918hypothetical protein
LOC_Os08g08820Os.11988.1.S1_at11/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820Os.57415.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820OsAffx.29023.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08830Os.9520.1.S1_at10/118+5112410..5121779expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16901.1.S1_at--859--1911Chr08:5089061..5089085 (25 bp)
ACGTGGACTCCGACACGGCCGTCGA
LOC_Os08g08790
OsAffx.16901.1.S1_at--95--5731Chr08:5089031..5089055 (25 bp)
GACTCCGACGCCATATCGGAACAGA
LOC_Os08g08790
OsAffx.16901.1.S1_at--1133--9911Chr08:5089018..5089042 (25 bp)
TATCGGAACAGAACCTAACCTCTCG
LOC_Os08g08790
OsAffx.16901.1.S1_at--381--5431Chr08:5089008..5089032 (25 bp)
GAACCTAACCTCTCGACACAAATAG
LOC_Os08g08790
OsAffx.16901.1.S1_at--854--5611Chr08:5088994..5089018 (25 bp)
GACACAAATAGCGAGAAACCCCAAC
LOC_Os08g08790
OsAffx.16901.1.S1_at--687--7251Chr08:5088925..5088949 (25 bp)
GTCCGGAATCCACGCACGATCTAAT
LOC_Os08g08790
OsAffx.16901.1.S1_at--1130--1871Chr08:5088911..5088934 (24 bp)
ACGATCTAATCAACTTCTCGCAAGA
LOC_Os08g08790
OsAffx.16901.1.S1_at--554--2511Chr08:5088857..5088923 (25 bp)
AACTTCTCGCAAGAATCAGGCTATT
LOC_Os08g08790
OsAffx.16901.1.S1_at--671--1411Chr08:5088846..5088870 (25 bp)
AGAATCAGGCTATTATCAACATGCA
LOC_Os08g08790
OsAffx.16901.1.S1_at--931--9371Chr08:5088244..5088268 (25 bp)
TCGAGGTGAGACCATCCGACACGAT
LOC_Os08g08790
OsAffx.16901.1.S1_at--905--8131Chr08:5088195..5088219 (25 bp)
GGACAAGGTAGGCATCCGCTCCGAC
LOC_Os08g08790
Target Sequence 
ACGTGGACTCCGACACGGCCGTCGATCTCCGACTCCGACGCCATATCGGAACAGAACCTAACCTCTCGACACAAATAGCG
AGAAACCCCAACCCGTTCTTCTTCTCCCCATCTCGATCGATCGCGACCACCCCAACGTCCGGAATCCACGCACGATCTAA
TCAACTTCTCGCAAGAATCAGGCTATTATCAACATGCATGTTTGTAATCTGTAATAACAAAATGCAGATCATCGTGAAGA
CTCTGACCGGCATCACCATCACCCTCGAGGTGAGACCATCCGACACGATCGACGACGTGAAGGCGAAGATCCAGGACAAG
GTAGGCATCCGCTCCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis