Browse Element(s) Details


OsAffx.29108.1.S1_at

Description tigr:9636.m00833
TID=OsAffx.29108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0880011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08750OsAffx.29107.1.S1_x_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08760OsAffx.5755.1.S1_at11/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08760Os.57479.1.S1_x_at1/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08770NANA8+5077283..5083369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08780OsAffx.21897.5.S1_x_at4/118+5083681..5086621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08790OsAffx.16901.1.S1_at11/118+5088060..5089137Ubiquitin family protein
LOC_Os08g08800OsAffx.29108.1.S1_at11/118+5090474..5093058hypothetical protein
LOC_Os08g08810OsAffx.29109.1.S1_at11/118+5101268..5101918hypothetical protein
LOC_Os08g08820Os.11988.1.S1_at11/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820Os.57415.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820OsAffx.29023.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08830Os.9520.1.S1_at10/118+5112410..5121779expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29108.1.S1_at--485--5851Chr08:5090505..5090529 (25 bp)
GACCATGCCAGCACATTGAGGAGGA
LOC_Os08g08800
OsAffx.29108.1.S1_at--874--5131Chr08:5090546..5090570 (25 bp)
GCAACGCAGGAAGGAGTCAAAGCTC
LOC_Os08g08800
OsAffx.29108.1.S1_at--695--2351Chr08:5090564..5090588 (25 bp)
AAAGCTCTAGTTTGCAACGCTTGGG
LOC_Os08g08800
OsAffx.29108.1.S1_at--1038--9671Chr08:5090605..5090629 (25 bp)
TCACCTGCACCTAGAGGAGGAGGCA
LOC_Os08g08800
OsAffx.29108.1.S1_at--305--5111Chr08:5090627..5090651 (25 bp)
GCACTCCAAGATGTGGCGAGGAGCA
LOC_Os08g08800
OsAffx.29108.1.S1_at--754--5011Chr08:5090649..5090673 (25 bp)
GCAGGAGCTCAATTTCGTCGGCACA
LOC_Os08g08800
OsAffx.29108.1.S1_at--981--3111Chr08:5090659..5090683 (25 bp)
AATTTCGTCGGCACATGGAGAAGGA
LOC_Os08g08800
OsAffx.29108.1.S1_at--501--6671Chr08:5090706..5090730 (25 bp)
GTTGCGGGAAGCCAAAGGTCTACCT
LOC_Os08g08800
OsAffx.29108.1.S1_at--554--9331Chr08:5090730..5090754 (25 bp)
TCGCCGGCAGATGGAAGAGGCACTT
LOC_Os08g08800
OsAffx.29108.1.S1_at--721--2631Chr08:5090770..5090921 (25 bp)
AACCTCGCCGGTTGGAAGATGCCAT
LOC_Os08g08800
OsAffx.29108.1.S1_at--1116--3711Chr08:5092724..5092744 (21 bp)
CTACGTATGGTAGGCTGGCTGGCAT
LOC_Os08g08800
Target Sequence 
GACCATGCCAGCACATTGAGGAGGAGGAGGCGCTTGGGAGGGCAACGCAGGAAGGAGTCAAAGCTCTAGTTTGCAACGCT
TGGGGGGGGAGTTCACGAGCTCACCTGCACCTAGAGGAGGAGGCACTCCAAGATGTGGCGAGGAGCAGGAGCTCAATTTC
GTCGGCACATGGAGAAGGAAAGTGCTCGAGGAAACGGGGATGTTGCGGGAAGCCAAAGGTCTACCTCGCCGGCAGATGGA
AGAGGCACTTGGGGAGAAGGAGTTTAACCTCGCCGGTTGGAAGATGCCATATAAGTAGAAAAACCACTACGTATGGTAGG
CTGGCTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis