Browse Element(s) Details


Os.9520.1.S1_at

Description gb:AK099689.1
DB_XREF= gi:32984898
TID=Os.9520.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073B17, full insert sequence.
FL= gb:AK099689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0883010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08790OsAffx.16901.1.S1_at11/118+5088060..5089137Ubiquitin family protein
LOC_Os08g08800OsAffx.29108.1.S1_at11/118+5090474..5093058hypothetical protein
LOC_Os08g08810OsAffx.29109.1.S1_at11/118+5101268..5101918hypothetical protein
LOC_Os08g08820Os.11988.1.S1_at11/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820Os.57415.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820OsAffx.29023.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08830Os.9520.1.S1_at10/118+5112410..5121779expressed protein
LOC_Os08g08840Os.4078.1.S1_at10/118+5133330..5137307Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os08g08850OsAffx.16902.1.S1_at11/118+5139288..5140218expressed protein
LOC_Os08g08860Os.14866.1.S1_at11/118+5140640..5143972CRS2-associated factor 2, putative, expressed
LOC_Os08g08870OsAffx.19542.3.S1_x_at2/118+5146553..5150459retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9520.1.S1_at--807--10251Chr08:5112870..5112894 (25 bp)
TTTGCTCGACAGTCACTATGGTGCA
LOC_Os08g08830
Os.9520.1.S1_at--22--7331Chr08:5112850..5112874 (25 bp)
GTGCATGTTCAATCGTTTGGTCCCA
LOC_Os08g08830
Os.9520.1.S1_at--1018--2251Chr08:5112777..5112801 (25 bp)
AAATCCCCATGTCTACTAGGTGATA
LOC_Os08g08830
Os.9520.1.S1_at--841--271Chr08:5112755..5112779 (25 bp)
ATAGGCAGCCCTAGTTCAGAACGGT
LOC_Os08g08830
Os.9520.1.S1_at--981--1431Chr08:5112738..5112762 (25 bp)
AGAACGGTGCAATCACTCCACTGAA
LOC_Os08g08830
Os.9520.1.S1_at--228--5611Chr08:5112662..5112686 (25 bp)
GACAATATCAGTCGGCTACCTGGCT
LOC_Os08g08830
Os.9520.1.S1_at--1155--4831Chr08:5112648..5112672 (25 bp)
GCTACCTGGCTGGTAACTTCCAAAA
LOC_Os08g08830
Os.9520.1.S1_at--985--1291NONE
AGATGCTCTCTTCTTGAATTTTCCC
NONE
Os.9520.1.S1_at--294--6931Chr08:5112510..5112534 (25 bp)
GTATGGCATGGCGTTCTGGTATTAA
LOC_Os08g08830
Os.9520.1.S1_at--258--2211Chr08:5112484..5112508 (25 bp)
ACAACAGTTCATTTTGGTCGCATGT
LOC_Os08g08830
Os.9520.1.S1_at--92--7811Chr08:5112469..5112493 (25 bp)
GGTCGCATGTATGACTCATCTTGCT
LOC_Os08g08830
Target Sequence 
TTTGCTCGACAGTCACTATGGTGCATGTTCAATCGTTTGGTCCCACCATCTCACATGCAGNGTGCTGCTTTTCCATTATT
ATAGTATATTTNNAAATCCCCATGTCTACTAGGTGATAGGCAGCCCTAGTTCAGAACGGTGCAATCACTCCACTGAACTT
GCGAAACAATATCTTTCTTTCTTGTTTCCCTTCTTTCCTTTTGTGCAGGACAATATCAGTCGGCTACCTGGCTGGTAACT
TCCAAAATCGAAAGGACATGTAAGGCGATCAAGGATGGAAGCAAAATCATCAGCTTAATTTCCAGAAAATGAAGGAGATG
CTCTCTTCTTGAATTTTCCCCCTTTTTTCATACTCTTTTGTATGGCATGGCGTTCTGGTATTAACACAACAGTTCATTTT
GGTCGCATGTATGACTCATCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis