Browse Element(s) Details


Os.4078.1.S1_at

Description gb:AF375053.1
DB_XREF= gi:14150752
TID=Os.4078.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4078 (NCBI UniGene Cluster)
DEF=Oryza sativa glucose-6-phosphatephosphate translocator mRNA, complete cds.
PROD=glucose-6-phosphatephosphate translocator
FL= gb:AK060577.1 gb:AF375053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0884010/11Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08820Os.11988.1.S1_at11/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820Os.57415.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820OsAffx.29023.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08830Os.9520.1.S1_at10/118+5112410..5121779expressed protein
LOC_Os08g08840Os.4078.1.S1_at10/118+5133330..5137307Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os08g08850OsAffx.16902.1.S1_at11/118+5139288..5140218expressed protein
LOC_Os08g08860Os.14866.1.S1_at11/118+5140640..5143972CRS2-associated factor 2, putative, expressed
LOC_Os08g08870OsAffx.19542.3.S1_x_at2/118+5146553..5150459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08880OsAffx.16903.1.S1_at11/118+5160866..5163221hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0005355molecular_functionglucose transporter activity
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4078.1.S1_at--60--3211Chr08:5135906..5136327 (25 bp)
CAATGTTGTCTGGTGGGTTGCTGCA
LOC_Os08g08840
Os.4078.1.S1_at--823--1371Chr08:5136329..5136353 (25 bp)
AGAGCGTTTTCTACCACTTATACAA
LOC_Os08g08840
Os.4078.1.S1_at--604--1051Chr08:5136356..5136380 (25 bp)
AGGTGTCTTACATGTCTCTGGATGA
LOC_Os08g08840
Os.4078.1.S1_at--597--6051Chr08:5136379..5136403 (25 bp)
GAGATTTCTCCATTGACATTTAGCA
LOC_Os08g08840
Os.4078.1.S1_at--118--6851Chr08:5136436..5136460 (25 bp)
GTTTCGTCAATCATTATCTTCCACA
LOC_Os08g08840
Os.4078.1.S1_at--236--3011Chr08:5136478..5136502 (25 bp)
AATGCACTAGGAGCTGCCATTGCCA
LOC_Os08g08840
Os.4078.1.S1_at--253--8251NONE
GGCACATTCCTGTATTCTCAGGCAA
NONE
Os.4078.1.S1_at--175--5291Chr08:5137043..5137067 (25 bp)
GAATGTCTCTGCCAAACCAGTAGCA
LOC_Os08g08840
Os.4078.1.S1_at--476--6951Chr08:5137062..5137086 (25 bp)
GTAGCAAGCACTGAGGCCAATTTTG
LOC_Os08g08840
Os.4078.1.S1_at--568--9771Chr08:5137146..5137170 (25 bp)
TAATGGTCTATGTTGCTCGTTTCTT
LOC_Os08g08840
Os.4078.1.S1_at--1077--5291Chr08:5137279..5137303 (25 bp)
GAAGGTAACTACCATCCAAGTCCCA
LOC_Os08g08840
Target Sequence 
CAATGTTGTCTGGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGA
TTTCTCCATTGACATTTAGCATTGGCAATACGATGAAGCGTATATCTGTGATTGTTTCGTCAATCATTATCTTCCACACA
CCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGGCAAAGCAGTGAGT
TCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGAAGGGATCCAGATGAAGAATGTCTCTGCCAAACCAGTAGCAAGC
ACTGAGGCCAATTTTGCTTGTGCAACTTATCTTGTAGATATAGGGGGGTTAGGTTTTGATATGAGGTCATAATAATAATG
GTCTATGTTGCTCGTTTCTTGTTCCNTGTTAGTGCAAACTGAACTCCAGAGGCTATGAACTGTGGTCGAGTGTAATCTTG
AAATAAAAACTTGAATGGGAATTTGTCGATGTTTCATTCTGGGTGTGGGAAGGTAACTACCATCCAAGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis