Browse Element(s) Details


Os.14866.1.S1_at

Description gb:AK107337.1
DB_XREF= gi:32992546
TID=Os.14866.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F11, full insert sequence.
FL= gb:AK107337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0886011/11CRS2-associated factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08830Os.9520.1.S1_at10/118+5112410..5121779expressed protein
LOC_Os08g08840Os.4078.1.S1_at10/118+5133330..5137307Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os08g08850OsAffx.16902.1.S1_at11/118+5139288..5140218expressed protein
LOC_Os08g08860Os.14866.1.S1_at11/118+5140640..5143972CRS2-associated factor 2, putative, expressed
LOC_Os08g08870OsAffx.19542.3.S1_x_at2/118+5146553..5150459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08880OsAffx.16903.1.S1_at11/118+5160866..5163221hypothetical protein
LOC_Os08g08890OsAffx.16904.1.S1_at10/118+5165347..5167682hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14866.1.S1_at--766--1451Chr08:5141551..5141575 (25 bp)
AGAAGAACCCTGCTGCTTGGATTAC
LOC_Os08g08860
Os.14866.1.S1_at--1155--7911Chr08:5141533..5141557 (25 bp)
GGATTACTTCCATCAGTTCCATGGG
LOC_Os08g08860
Os.14866.1.S1_at--17--3271Chr08:5141461..5141485 (25 bp)
CAGAAACATTAGAAACCGCGCCGGT
LOC_Os08g08860
Os.14866.1.S1_at--420--5371Chr08:5141365..5141389 (25 bp)
GAAGACCCTGCTCTATTTGAGTGCT
LOC_Os08g08860
Os.14866.1.S1_at--891--5271Chr08:5141294..5141318 (25 bp)
GAATGAGTACTGTGCTTCCAGCCAA
LOC_Os08g08860
Os.14866.1.S1_at--512--252Chr03:24592147..24592178 (24 bp)
ATATCTTCCATCATCTGTTTCTTTG
NONE
Os.14866.1.S1_at--36--9711Chr08:5141236..5141260 (25 bp)
TCAAATGGCACATGTTCCTGCTGCT
LOC_Os08g08860
Os.14866.1.S1_at--647--4851Chr08:5141208..5141232 (25 bp)
GCTATCCGGGCAGATATCAACCATC
LOC_Os08g08860
Os.14866.1.S1_at--149--3711Chr08:5141134..5141158 (25 bp)
CTAGTGGTACAGACAGGCCTTTTGA
LOC_Os08g08860
Os.14866.1.S1_at--117--4891Chr08:5141069..5141093 (25 bp)
GCTTTGTGGCTGCTATCCTGTTGAT
LOC_Os08g08860
Os.14866.1.S1_at--655--9271Chr08:5141054..5141078 (25 bp)
TCCTGTTGATTCCTTGATGTGCACC
LOC_Os08g08860
Target Sequence 
AGAAGAACCCTGCTGCTTGGATTACTTCCATCAGTTCCATGGGATGTCATGTGATCAGAACAAATTGNTGAAAACCTATT
ACGGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGANTATNACANTTTCCTGCAGCNTATCTGGAATNTGGAGTTGTN
TGAAAGAGNTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACAGTACAGACGCACAT
TGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTC
AAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCAAAAGTTGAG
AGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTCAGAGCCTCAAATGAGGT
TGTGGGCTTTGTGGCTGCTATCCTGTTGATTCCTTGATGTGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis