Browse Element(s) Details


OsAffx.29023.1.S1_x_at

Description tigr:9636.m00341
TID=OsAffx.29023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=140640 homeobox protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0419010/11START domain containing protein, expressed
LOC_Os08g088202/11START domain containing protein, expressed
LOC_Os04g535402/11START domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein
LOC_Os08g04210Os.12216.2.S1_a_at11/118+2047854..204948633 kDa secretory protein, putative, expressed
LOC_Os08g04220OsAffx.29024.1.S1_at11/118+2051584..2052410hypothetical protein
LOC_Os08g04230Os.6113.1.S1_at11/118+2053310..205489933 kDa secretory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29023.1.S1_x_at--519--5711Chr08:2029238..2029262 (25 bp)
GACTCCACCCGCAGCGAGTGGGACA
LOC_Os08g04190
OsAffx.29023.1.S1_x_at--1151--6112Chr08:2029223..2029247 (25 bp)
GAGTGGGACATCCTCTCCAATGGCG
LOC_Os08g04190
OsAffx.29023.1.S1_x_at--1156--3191Chr08:2029206..2029230 (25 bp)
CAATGGCGGCGTCGTCCAAGAAATG
LOC_Os08g04190
OsAffx.29023.1.S1_x_at--542--8371Chr08:2029199..2029223 (25 bp)
GGCGTCGTCCAAGAAATGGCTCACA
LOC_Os08g04190
OsAffx.29023.1.S1_x_at--324--2291Chr08:2029186..2029210 (25 bp)
AAATGGCTCACATCGCCAATGGCCG
LOC_Os08g04190
OsAffx.29023.1.S1_x_at--846--9291NONE
TCCGCGTCAACAACGCGAACTCGAA
NONE
OsAffx.29023.1.S1_x_at--579--5431Chr08:2029025..2029049 (25 bp)
GAACCAGAGCAACATGCTGATACTG
LOC_Os08g04190
OsAffx.29023.1.S1_x_at--1028--4592Chr08:5109560..5109584 (25 bp)
GCGACCCGGACTACGTGGCGCTGCT
LOC_Os08g08820
OsAffx.29023.1.S1_x_at--332--4773Chr08:5109679..5109698 (20 bp)
GCTGCTGACGGTGGCGTTCCAGATA
LOC_Os08g08820
OsAffx.29023.1.S1_x_at--426--7531Chr08:2028829..2028853 (25 bp)
GTGGCGTTCCAGATACTGGTCGACT
LOC_Os08g04190
OsAffx.29023.1.S1_x_at--462--1271Chr08:2028819..2028843 (25 bp)
AGATACTGGTCGACTCCGTGCCCAC
LOC_Os08g04190
Target Sequence 
GACTCCACCCGCAGCGAGTGGGACATCCTCTCCAATGGCGGCGTCGTCCAAGAAATGGCTCACATCGCCAATGGCCGCGA
CCACGGCAACGCCGTCTCCCTCCTCCGCGTCAACAACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCT
GCACGGACGCGACGGGGTCGTACGTGATATACGCGCCGGTGGACGTGGTGGCGATGAACGTGGTGCTCAACGGCGGCGAC
CCGGACTACGTGGCGCTGCTGCCGTCGGGGTTCGCCATCCTCCCCGACGGGCCGGACGGCGGCGGCGGGTCGCTGCTGAC
GGTGGCGTTCCAGATACTGGTCGACTCCGTGCCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29023.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis