Browse Element(s) Details


Os.56353.1.S1_at

Description gb:AK109912.1
DB_XREF= gi:32995121
TID=Os.56353.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-H11, full insert sequence.
FL= gb:AK109912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0414011/11Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04090Os.52271.1.S1_at11/118+1982002..1984474expressed protein
LOC_Os08g04100NANA8+1986627..1987348hypothetical protein
LOC_Os08g04110Os.48856.1.S1_at11/118+1988178..1992555Phosphate/phosphoenolpyruvate translocator, putative, expressed
LOC_Os08g04120Os.27253.1.A1_at7/118+1993833..1998883expressed protein
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56353.1.S1_at--68--9811Chr08:2006250..2006274 (25 bp)
TAACCTGGAGTTCGCCTGCTCGGAG
LOC_Os08g04140
Os.56353.1.S1_at--557--671Chr08:2006359..2006383 (25 bp)
ATGAACGCTTACTACCAGGCCAGGG
LOC_Os08g04140
Os.56353.1.S1_at--804--8172Chr08:2006387..2006411 (25 bp)
GGAACTCATGGAATTGCTTCTTCAA
LOC_Os08g04140
Os.56353.1.S1_at--657--6071Chr08:2006567..2006591 (25 bp)
GAGTTTGCTCCAAGTTAGCCAGCCA
LOC_Os08g04140
Os.56353.1.S1_at--537--9991Chr08:2006582..2006606 (25 bp)
TAGCCAGCCAATCTCTGGAGCTTGA
LOC_Os08g04140
Os.56353.1.S1_at--884--8751Chr08:2006632..2006656 (25 bp)
TGTTTGTCCAAGTGCCCCTAGAAAA
LOC_Os08g04140
Os.56353.1.S1_at--818--5211Chr08:2006691..2006715 (25 bp)
GAATTCAAGTCATGTTTAGCCTCAA
LOC_Os08g04140
Os.56353.1.S1_at--882--6691Chr08:2006763..2006787 (25 bp)
GTTCCATATCTTCAGTGCAGTTCTT
LOC_Os08g04140
Os.56353.1.S1_at--956--5251Chr08:2006805..2006829 (25 bp)
GAATCCTAGGCATGTCTTAATTGTA
LOC_Os08g04140
Os.56353.1.S1_at--618--10191Chr08:2006842..2006866 (25 bp)
TATATGGTCCTGTGCTGCTGTGAAC
LOC_Os08g04140
Os.56353.1.S1_at--972--8671Chr08:2006860..2006884 (25 bp)
TGTGAACGAACAGTGGCCCAACTAT
LOC_Os08g04140
Target Sequence 
TAACCTGGAGTTCGCCTGCTCGGAGAGCGACTGCGCCGCCATCCAGGGCACCGGCGGATGCTCCTTCCCCGACGACGATG
GCAGCCTGCCGACGCGGGCGTCGGTCACCATGAACGCTTACTACCAGGCCAGGGGGAGGAACTCATGGAATTGCTTCTTC
AACGGCACTGGCCTCATCACCATCACTGATCCCAGTTCTGGCAATTGCAAGTATGCCTGAGTTGAGAGTTTGCTCCAAGT
TAGCCAGCCAATCTCTGGAGCTTGACAAATAAAGTTTTCAAGGGATGTTTTGTTTGTCCAAGTGCCCCTAGAAAATATGG
TGTTCTATATTTCAGTGTCAGAGTTGCTAGAATTCAAGTCATGTTTAGCCTCAATGTTTGGGTAATCTTTAGAGAGGAAT
GCTTTATACCGAGATAATATTGTTCCATATCTTCAGTGCAGTTCTTCAAAGTTCAAAGAGTATGAATCCTAGGCATGTCT
TAATTGTATTTGCATAGCACTATATGGTCCTGTGCTGCTGTGAACGAACAGTGGCCCAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis