Browse Element(s) Details


Os.52271.1.S1_at

Description gb:AK066009.1
DB_XREF= gi:32976027
TID=Os.52271.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047E17, full insert sequence.
FL= gb:AK066009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0409011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04050NANA8+1957913..1959035retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.22699.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.20020.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.10039.1.S1_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04070OsAffx.5695.1.S1_at11/118+1967211..1968404hypothetical protein
LOC_Os08g04080Os.19099.1.S1_x_at2/118+1972270..1974459retrotransposon, putative, centromere-specific
LOC_Os08g04090Os.52271.1.S1_at11/118+1982002..1984474expressed protein
LOC_Os08g04100NANA8+1986627..1987348hypothetical protein
LOC_Os08g04110Os.48856.1.S1_at11/118+1988178..1992555Phosphate/phosphoenolpyruvate translocator, putative, expressed
LOC_Os08g04120Os.27253.1.A1_at7/118+1993833..1998883expressed protein
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52271.1.S1_at--561--10351Chr08:1983920..1983944 (25 bp)
TTTATACGCCTGTTGATTATGCTGT
LOC_Os08g04090
Os.52271.1.S1_at--640--6951Chr08:1983943..1983967 (25 bp)
GTAGAAGCTTCACTTGCAGTCAATA
LOC_Os08g04090
Os.52271.1.S1_at--1160--8651Chr08:1983975..1983999 (25 bp)
TGGGCCATCTGATTTCACCGGTAAA
LOC_Os08g04090
Os.52271.1.S1_at--766--8811Chr08:1984047..1984071 (25 bp)
TGATACCCAAGTGACAGGCTCTCCA
LOC_Os08g04090
Os.52271.1.S1_at--144--7971Chr08:1984090..1984114 (25 bp)
GGATCTATTGAGTTATCTCGTCATA
LOC_Os08g04090
Os.52271.1.S1_at--308--9511Chr08:1984105..1984129 (25 bp)
TCTCGTCATATAGTAGTAGTCCCAT
LOC_Os08g04090
Os.52271.1.S1_at--940--5911Chr08:1984138..1984162 (25 bp)
GAGCTAGTGCTCAATGTTATTTTGT
LOC_Os08g04090
Os.52271.1.S1_at--1000--5211Chr08:1984195..1984219 (25 bp)
GAATTTGTTCTTACCAACTATGATG
LOC_Os08g04090
Os.52271.1.S1_at--763--2931Chr08:1984238..1984262 (25 bp)
AAGGCCGTTTTGAGCTGCAGGTGAA
LOC_Os08g04090
Os.52271.1.S1_at--14--2911Chr08:1984261..1984285 (25 bp)
AAGGTCATCTGGACAGGCGTAGTGA
LOC_Os08g04090
Os.52271.1.S1_at--1162--6271Chr08:1984364..1984388 (25 bp)
GATGTTAATAGTAACCTCTCTGGAG
LOC_Os08g04090
Target Sequence 
TTTATACGCCTGTTGATTATGCTGTAGAAGCTTCACTTGCAGTCAATATTTTNGATGGGCCATCTGATTTCACCGGTAAA
GTGATTGCTTGGACTAGTGGAAATAAGGACAATGAGNTCGTTCTACATGATACCCAAGTGACAGGCTCTCCAACAAAACT
TGGAGATGATGGATCTATTGAGTTATCTCGTCATATAGTAGTAGTCCCATTGGATGAAGAGCTAGTGCTCAATGTTATTT
TGTTTCATGGTGATGACCATGAAGACGAATGCTTTGAATTTGTTCTTACCAACTATGATGAAGAATCTAGTTTCAAAGAA
GGCCGTTTTGAGCTGCAGGTGAAGGTCATCTGGACAGGCGTAGTGAGAACGGGAGAACACAAGATGTGGGAGAGCACAGG
GAGAAATAGAATGTTAGTGTGATTAAGTTTAAAATCATTGGAAAGATGTTAATAGTAACCTCTCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis