Browse Element(s) Details


Os.48856.1.S1_at

Description gb:AK108618.1
DB_XREF= gi:32993827
TID=Os.48856.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C04, full insert sequence.
FL= gb:AK108618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0411011/11Phosphate/phosphoenolpyruvate translocator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04060OsAffx.22699.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.20020.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.10039.1.S1_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04070OsAffx.5695.1.S1_at11/118+1967211..1968404hypothetical protein
LOC_Os08g04080Os.19099.1.S1_x_at2/118+1972270..1974459retrotransposon, putative, centromere-specific
LOC_Os08g04090Os.52271.1.S1_at11/118+1982002..1984474expressed protein
LOC_Os08g04100NANA8+1986627..1987348hypothetical protein
LOC_Os08g04110Os.48856.1.S1_at11/118+1988178..1992555Phosphate/phosphoenolpyruvate translocator, putative, expressed
LOC_Os08g04120Os.27253.1.A1_at7/118+1993833..1998883expressed protein
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48856.1.S1_at--304--1131Chr08:1988738..1988762 (25 bp)
AGTGCTGACAGCAAAGCCAACCCAG
LOC_Os08g04110
Os.48856.1.S1_at--383--6291Chr08:1988702..1988726 (25 bp)
GATGTTGAGACATCGATCTCGACTA
LOC_Os08g04110
Os.48856.1.S1_at--1021--1411Chr08:1988529..1988553 (25 bp)
AGAAATGAGCTCTCGCTTTTCCTTT
LOC_Os08g04110
Os.48856.1.S1_at--667--10391Chr08:1988513..1988537 (25 bp)
TTTTCCTTTGAGTTGGTCAGCTCTC
LOC_Os08g04110
Os.48856.1.S1_at--129--9531Chr08:1988470..1988494 (25 bp)
TCTCTTCCTACTTATCAGCAGGGAA
LOC_Os08g04110
Os.48856.1.S1_at--259--9991Chr08:1988402..1988426 (25 bp)
TAGCGTACCGTTTTGTTCGCTCGAA
LOC_Os08g04110
Os.48856.1.S1_at--991--5931Chr08:1988370..1988394 (25 bp)
GAGCACGCCATACATATCAACTAGG
LOC_Os08g04110
Os.48856.1.S1_at--1008--8731Chr08:1988310..1988334 (25 bp)
TGTAGCAATTTATCAGGTTCTTCAC
LOC_Os08g04110
Os.48856.1.S1_at--263--10411Chr08:1988267..1988291 (25 bp)
TTATACAATGTTTTCCTTACCTAGG
LOC_Os08g04110
Os.48856.1.S1_at--785--10451Chr08:1988251..1988275 (25 bp)
TTACCTAGGAGGTCCTGCCAATGGA
LOC_Os08g04110
Os.48856.1.S1_at--576--8011Chr08:1988229..1988253 (25 bp)
GGAGGACTGCCTGTGTCAAGTATGT
LOC_Os08g04110
Target Sequence 
AGTGCTGACAGCAAAGCCAACCCAGNAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTG
AAAGCTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAGTTGGTCAGCTCTCCTT
GGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACATTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATA
CGTTAGCGTACCGTTTTGTTCGCTCGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTT
GTCATTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCACAAATATGCAACCTGATTCTTATACAATGTTTTCCTTACCT
AGGAGGTCCTGCCAATGGAGGACTGCCTGTGTCAAGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis