Browse Element(s) Details


Os.13900.1.S1_at

Description gb:AK072535.1
DB_XREF= gi:32982558
TID=Os.13900.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.13900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133G14, full insert sequence.
FL= gb:AK072535.1 gb:AK060205.1 gb:AK069187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0418010/11Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04120Os.27253.1.A1_at7/118+1993833..1998883expressed protein
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein
LOC_Os08g04210Os.12216.2.S1_a_at11/118+2047854..204948633 kDa secretory protein, putative, expressed
LOC_Os08g04220OsAffx.29024.1.S1_at11/118+2051584..2052410hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004834molecular_functiontryptophan synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13900.1.S1_at--340--7491Chr08:2025311..2025335 (25 bp)
GTGGGAGTTCTCCATGGATCATTGA
LOC_Os08g04180
Os.13900.1.S1_at--645--10071Chr08:2025385..2025490 (25 bp)
TAGTGCTGGGCTGGACTACCCTGGT
LOC_Os08g04180
Os.13900.1.S1_at--203--2031Chr08:2025480..2025504 (25 bp)
ACTACCCTGGTGTTGGGCCTGAGCA
LOC_Os08g04180
Os.13900.1.S1_at--132--8651Chr08:2025493..2025517 (25 bp)
TGGGCCTGAGCATAGCTTTTTGAAG
LOC_Os08g04180
Os.13900.1.S1_at--13--6211NONE
GAGGCACTGGATGCTTTCAAGCGCG
NONE
Os.13900.1.S1_at--465--4651Chr08:2026311..2026335 (25 bp)
GCGTCTCTCGGCTGGAGGGCATCAT
LOC_Os08g04180
Os.13900.1.S1_at--1089--1071Chr08:2026326..2026350 (25 bp)
AGGGCATCATCCCTGCTCTGGAGAC
LOC_Os08g04180
Os.13900.1.S1_at--346--611Chr08:2026356..2026380 (25 bp)
ATGCGCTCGCCTACCTGGAGAAGCT
LOC_Os08g04180
Os.13900.1.S1_at--941--2911Chr08:2026439..2026463 (25 bp)
AAGGATGTCCACACAGCCAGCAAGT
LOC_Os08g04180
Os.13900.1.S1_at--83--4411Chr08:2026454..2026478 (25 bp)
GCCAGCAAGTACCTTGATGTCTGAA
LOC_Os08g04180
Os.13900.1.S1_at--13--2451Chr08:2026498..2026522 (25 bp)
AAAATGATAGCTTTTCCATGAGCAG
LOC_Os08g04180
Target Sequence 
GTGGGAGTTCTCCATGGATCATTGAGCTATGTGTTGCAGGATGATGATGGACAAGTTATTGAACCCCACTCCATTAGTGC
TGGGCTGGACTACCCTGGTGTTGGGCCTGAGCATAGCTTTTTGAAGGATATTGGACGTGCTGAATATGACAGNGTGACAG
ATCAGGAGGCACTGGATGCTTTCAAGCGCGTCTCTCGGCTGGAGGGCATCATCCCTGCTCTGGAGACNTCCCATGCGCTC
GCCTACCTGGAGAAGCTCTGCCCAACGCTGCCCGACGGCGTGAGGGTGGTGGTGAACTGCAGTGGAAGAGGAGACAAGGA
TGTCCACACAGCCAGCAAGTACCTTGATGTCTGAAAAAAACTCTNAGAGGGNCTAAAAAATGATAGCTTTTCCATGAGCA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis