Browse Element(s) Details


OsAffx.29024.1.S1_at

Description tigr:9636.m00344
TID=OsAffx.29024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0422011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein
LOC_Os08g04210Os.12216.2.S1_a_at11/118+2047854..204948633 kDa secretory protein, putative, expressed
LOC_Os08g04220OsAffx.29024.1.S1_at11/118+2051584..2052410hypothetical protein
LOC_Os08g04230Os.6113.1.S1_at11/118+2053310..205489933 kDa secretory protein, putative, expressed
LOC_Os08g04240Os.2227.1.S1_at11/118+2056863..205856533 kDa secretory protein, putative, expressed
LOC_Os08g04250Os.8838.2.S1_at11/118+2060053..206143133 kDa secretory protein, putative, expressed
LOC_Os08g04260NANA8+2066196..2066977hypothetical protein
LOC_Os08g04270Os.18661.1.S1_at11/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04270OsAffx.16132.1.S1_at1/118+2070890..2076976Polycomb group protein FIE2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29024.1.S1_at--184--3951Chr08:2052256..2052280 (25 bp)
CGGCTATGGTCGACTCCTTTCGATT
LOC_Os08g04220
OsAffx.29024.1.S1_at--380--4871Chr08:2052258..2052282 (25 bp)
GCTATGGTCGACTCCTTTCGATTGT
LOC_Os08g04220
OsAffx.29024.1.S1_at--1082--811Chr08:2052261..2052285 (25 bp)
ATGGTCGACTCCTTTCGATTGTGGG
LOC_Os08g04220
OsAffx.29024.1.S1_at--21--4311Chr08:2052271..2052295 (25 bp)
CCTTTCGATTGTGGGGAGCTCTTTT
LOC_Os08g04220
OsAffx.29024.1.S1_at--855--4811Chr08:2052288..2052312 (25 bp)
GCTCTTTTGGTGAGATGTCGGCAAT
LOC_Os08g04220
OsAffx.29024.1.S1_at--539--3671Chr08:2052291..2052315 (25 bp)
CTTTTGGTGAGATGTCGGCAATGGC
LOC_Os08g04220
OsAffx.29024.1.S1_at--1074--9431Chr08:2052305..2052329 (25 bp)
TCGGCAATGGCGTTTGGAGGACGAT
LOC_Os08g04220
OsAffx.29024.1.S1_at--445--7571Chr08:2052340..2052364 (25 bp)
GGGCTTTTGTCGTGCTGGTCAGCAA
LOC_Os08g04220
OsAffx.29024.1.S1_at--97--4891Chr08:2052342..2052366 (25 bp)
GCTTTTGTCGTGCTGGTCAGCAATG
LOC_Os08g04220
OsAffx.29024.1.S1_at--865--10251Chr08:2052345..2052369 (25 bp)
TTTGTCGTGCTGGTCAGCAATGGGA
LOC_Os08g04220
OsAffx.29024.1.S1_at--204--4011Chr08:2052350..2052374 (25 bp)
CGTGCTGGTCAGCAATGGGAGCCGC
LOC_Os08g04220
Target Sequence 
CGGCTATGGTCGACTCCTTTCGATTGTGGGGAGCTCTTTTGGTGAGATGTCGGCAATGGCGTTTGGAGGACGATGATGGT
GATGGGGCTTTTGTCGTGCTGGTCAGCAATGGGAGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis