Browse Element(s) Details


Os.18661.1.S1_at

Description gb:AK111761.1
DB_XREF= gi:37988424
TID=Os.18661.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058F21, full insert sequence.
FL= gb:AK111761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0427011/11Polycomb group protein FIE2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04210Os.12216.2.S1_a_at11/118+2047854..204948633 kDa secretory protein, putative, expressed
LOC_Os08g04220OsAffx.29024.1.S1_at11/118+2051584..2052410hypothetical protein
LOC_Os08g04230Os.6113.1.S1_at11/118+2053310..205489933 kDa secretory protein, putative, expressed
LOC_Os08g04240Os.2227.1.S1_at11/118+2056863..205856533 kDa secretory protein, putative, expressed
LOC_Os08g04250Os.8838.2.S1_at11/118+2060053..206143133 kDa secretory protein, putative, expressed
LOC_Os08g04260NANA8+2066196..2066977hypothetical protein
LOC_Os08g04270Os.18661.1.S1_at11/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04270OsAffx.16132.1.S1_at1/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04280Os.52196.1.S1_at11/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04280OsAffx.17544.1.S1_at1/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04290OsAffx.16823.1.S1_at10/118+2089543..2094035Polycomb group protein FIE2, putative
LOC_Os08g04300Os.50199.1.S1_at11/118+2101974..2105683fringe protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000003biological_processreproduction
GO:0009910biological_processnegative regulation of flower development
GO:0009960biological_processendosperm development
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18661.1.S1_at--187--7111Chr08:2076154..2076178 (25 bp)
GTCTTTGTCTGGGAAGTACAGTCCA
LOC_Os08g04270
Os.18661.1.S1_at--84--7031Chr08:2076169..2076193 (25 bp)
GTACAGTCCAGTCCTCCTGTTTTAA
LOC_Os08g04270
Os.18661.1.S1_at--1001--3851Chr08:2076185..2076311 (25 bp)
CTGTTTTAACTGCTCGGCTGACTAA
LOC_Os08g04270
Os.18661.1.S1_at--445--9451Chr08:2076302..2076324 (23 bp)
TCGGCTGACTAATCCGCAATGCAAA
LOC_Os08g04270
Os.18661.1.S1_at--645--9771Chr08:2076646..2076670 (25 bp)
TAAGATTGACTTGGGAATTCCTGCA
LOC_Os08g04270
Os.18661.1.S1_at--1119--5191Chr08:2076660..2076684 (25 bp)
GAATTCCTGCATGTGTACTTTGTTG
LOC_Os08g04270
Os.18661.1.S1_at--455--271Chr08:2076793..2076817 (25 bp)
ATAGGATACTGCTTCTGTTATATGC
LOC_Os08g04270
Os.18661.1.S1_at--451--4751Chr08:2076816..2076840 (25 bp)
GCTGAATGTTTCAAGTTAGGGCCTT
LOC_Os08g04270
Os.18661.1.S1_at--255--5351Chr08:2076852..2076876 (25 bp)
GAAGATTCGGCTATGCCAGATTTTT
LOC_Os08g04270
Os.18661.1.S1_at--1080--2811Chr08:2076881..2076905 (25 bp)
AAGTTGCCATTTGCTTTGTTACCAA
LOC_Os08g04270
Os.18661.1.S1_at--202--10731Chr08:2076908..2076932 (25 bp)
TTGCATGGCAAAGATTGGCCCAGCT
LOC_Os08g04270
Target Sequence 
GTCTTTGTCTGGGAAGTACAGTCCAGTCCTCCTGTTTTAACTGCTCGGCTGACTAATCCGCAATGCAAATCTGCGATAAG
GCAGACTGCCGTGTCATTTGATGGAAGCACAATCCTTGCCTGCAGCGAGGATGGCAGCATATGGCGATGGGATGAAGTGG
ACCATCCAAAAGCATGAAAAGTACCCTTATAGNCAGACCATGGCAATGCCAGATTAAGATTGACTTGGGAATTCCTGCAT
GTGTACTTTGTTGTGGGGGTTATAGTAATCAGTCTTACTGTTGAAAAAAAGTGCAATCTGATACTCTGAAATTAGAAGGA
TTGACAGCTGAATGCTGGGGTTACCAACTTGAATGTTGCAAATAGGATACTGCTTCTGTTATATGCTGAATGTTTCAAGT
TAGGGCCTTTTTNGTAAATGGGAAGATTCGGCTATGCCAGATTTTTGGAAAAGTTGCCATTTGCTTTGTTACCAAAGTTG
CATGGCAAAGATTGGCCCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis