Browse Element(s) Details


Os.8838.2.S1_at

Description gb:AK063306.1
DB_XREF= gi:32973324
TID=Os.8838.2
CNT=56
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F10, full insert sequence.
FL= gb:AK063306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0425011/1133 kDa secretory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein
LOC_Os08g04210Os.12216.2.S1_a_at11/118+2047854..204948633 kDa secretory protein, putative, expressed
LOC_Os08g04220OsAffx.29024.1.S1_at11/118+2051584..2052410hypothetical protein
LOC_Os08g04230Os.6113.1.S1_at11/118+2053310..205489933 kDa secretory protein, putative, expressed
LOC_Os08g04240Os.2227.1.S1_at11/118+2056863..205856533 kDa secretory protein, putative, expressed
LOC_Os08g04250Os.8838.2.S1_at11/118+2060053..206143133 kDa secretory protein, putative, expressed
LOC_Os08g04260NANA8+2066196..2066977hypothetical protein
LOC_Os08g04270Os.18661.1.S1_at11/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04270OsAffx.16132.1.S1_at1/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04280Os.52196.1.S1_at11/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04280OsAffx.17544.1.S1_at1/118+2078228..2087336Actin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8838.2.S1_at--186--2471Chr08:2060863..2060887 (25 bp)
AACAACACAGGCTGTCTCGGTGGGT
LOC_Os08g04250
Os.8838.2.S1_at--917--1131Chr08:2060988..2061012 (25 bp)
AGTGCCTATCTTCGACAGTGTCCAA
LOC_Os08g04250
Os.8838.2.S1_at--814--10731Chr08:2061015..2061039 (25 bp)
TTGACAAGGCTTGTGGCGCTGCGCA
LOC_Os08g04250
Os.8838.2.S1_at--488--9531Chr08:2061093..2061117 (25 bp)
TCTATTTCCCACTCGAAGCCAACGG
LOC_Os08g04250
Os.8838.2.S1_at--756--2571Chr08:2061113..2061137 (25 bp)
AACGGCCGTGCCACTATTGATATGA
LOC_Os08g04250
Os.8838.2.S1_at--508--7031Chr08:2061142..2061166 (25 bp)
GTACACTAAAGTTACCATGCACTGA
LOC_Os08g04250
Os.8838.2.S1_at--123--4991Chr08:2061207..2061231 (25 bp)
GCATGCGTACATACATCGCGTAGCA
LOC_Os08g04250
Os.8838.2.S1_at--800--2091Chr08:2061219..2061243 (25 bp)
ACATCGCGTAGCACTTTAATTTCAC
LOC_Os08g04250
Os.8838.2.S1_at--384--3131Chr08:2061236..2061260 (25 bp)
AATTTCACGAATATGCACTAGCTGC
LOC_Os08g04250
Os.8838.2.S1_at--114--2831Chr08:2061362..2061386 (25 bp)
AAGTTCGTCAACCATTCATAATGAG
LOC_Os08g04250
Os.8838.2.S1_at--14--3011Chr08:2061381..2061405 (25 bp)
AATGAGCGCCGCAATAGTGTGAATG
LOC_Os08g04250
Target Sequence 
AACAACACAGGCTGTCTCGGTGGGTGGCAACGGTCTGGGCAGGGCGAAGGAGCAGTACACGCCGTTCGTGAGCGTCTACG
CGCTGGCCCAGTGCACACGAGACCTTGCACCGCCTGCGTGTGCTCAGTGCCTATCTTCGACAGTGTCCAAGTTTGACAAG
GCTTGTGGCGCTGCGCAGGGGTGCCAAATCGACTATAGCAGCTGTTGGGCACGCTACGAAATCTACCCCTTCTATTTCCC
ACTCGAAGCCAACGGCCGTGCCACTATTGATATGAACAAGTACACTAAAGTTACCATGCACTGAATAAATCTAGCATACA
TATGCTACGCATATAGTACGGTAAGCATGCGTACATACATCGCGTAGCACTTTAATTTCACGAATATGCACTAGCTGCAG
TTTGTTTGGAATGAATAAAGATGTGTACTGAGTATGTTGTACACTTAAGTGAATCGAATATCTCTTTATCATTATTTTGC
CACAATATATTAATTGGCCAAGTTCGTCAACCATTCATAATGAGCGCCGCAATAGTGTGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8838.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis