Browse Element(s) Details


OsAffx.16823.1.S1_at

Description tigr:9636.m00351
TID=OsAffx.16823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY150644 fertilization-independent endosperm protein 2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0429010/11Polycomb group protein FIE2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04260NANA8+2066196..2066977hypothetical protein
LOC_Os08g04270Os.18661.1.S1_at11/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04270OsAffx.16132.1.S1_at1/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04280Os.52196.1.S1_at11/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04280OsAffx.17544.1.S1_at1/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04290OsAffx.16823.1.S1_at10/118+2089543..2094035Polycomb group protein FIE2, putative
LOC_Os08g04300Os.50199.1.S1_at11/118+2101974..2105683fringe protein, putative, expressed
LOC_Os08g04310Os.14191.1.S1_at11/118+2109339..2110694Plastocyanin-like domain containing protein, expressed
LOC_Os08g04320OsAffx.25936.1.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.7.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.2.S1_x_at4/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.5.S1_x_at1/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04330NANA8+2115691..2118666transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000003biological_processreproduction
GO:0009910biological_processnegative regulation of flower development
GO:0009960biological_processendosperm development
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16823.1.S1_at--366--251Chr08:2092119..2092143 (25 bp)
ATATCTACCGCTTTTTAAGTTGTGG
LOC_Os08g04290
OsAffx.16823.1.S1_at--536--9251Chr08:2092278..2092302 (25 bp)
TCCTATTCATGGACTGATGCTACAT
LOC_Os08g04290
OsAffx.16823.1.S1_at--602--3111Chr08:2092318..2092440 (25 bp)
AATTTGTCCAATTTCCGGTCCTGTG
LOC_Os08g04290
OsAffx.16823.1.S1_at--996--10651NONE
TTCCGGTCCTGTGTGCTGAAATACA
NONE
OsAffx.16823.1.S1_at--332--2271Chr08:2092950..2092974 (25 bp)
AAATCTTGCTGTGGGAATCGATCAC
LOC_Os08g04290
OsAffx.16823.1.S1_at--1066--4611Chr08:2093175..2093196 (22 bp)
GCGAGGGTCACATTGATGTTCTTCA
LOC_Os08g04290
OsAffx.16823.1.S1_at--318--5331Chr08:2093197..2093221 (25 bp)
GAAGTACCCTGTGCCAGAATGTAAC
LOC_Os08g04290
OsAffx.16823.1.S1_at--198--6551Chr08:2093246..2093270 (25 bp)
GATTTTCACCACAATCAGTTGGCAA
LOC_Os08g04290
OsAffx.16823.1.S1_at--249--8531Chr08:2093524..2093548 (25 bp)
TGGAAAGTACAGACCAGCCCTCCTG
LOC_Os08g04290
OsAffx.16823.1.S1_at--35--9271Chr08:2093544..2093712 (25 bp)
TCCTGTTCTAATTGCTCGGCTCAAT
LOC_Os08g04290
OsAffx.16823.1.S1_at--440--9092Chr08:23629065..23629087 (22 bp)
TGCTCGGCTCAATAATCCACAAGTG
NONE
Target Sequence 
ATATCTACCGCTTTTTAAGTTGTGGAATGGACAACACTGTGAGAATCTGGTCAATGAAAGAATTCTGGGAATATGTTGAG
AAATCCTATTCATGGACTGATGCTACATCAAAATTTCCAACAAAATTTGTCCAATTTCCGGTCCTGTGTGCTGAAATACA
TTCTAACTATGTAGACTGTACTAAATGGCTTGGGGACTTTGTCCTGTCAAAGAGTGTTGAAAATGAAATCTTGCTGTGGG
AATCGATCACAAAAGAAGAAAACCCTGGCGAGGGTCACATTGATGTTCTTCAGAAGTACCCTGTGCCAGAATGTAACATC
TGGTTCATGAAATTCTCATGTGATTTTCACCACAATCAGTTGGCAATAGGAAACCGTGATGGTAAAGTCTATGTCTGGAA
AGTACAGACCAGCCCTCCTGTTCTAATTGCTCGGCTCAATAATCCACAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis