Browse Element(s) Details


OsAffx.5755.1.S1_at

Description tigr:9636.m00829
TID=OsAffx.5755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ubiquitin ribosomal protein S27a - potato (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0876011/11Ubiquitin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08730NANA8+5052608..5052937hypothetical protein
LOC_Os08g08740OsAffx.16900.1.S1_at11/118+5062292..5063296hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_x_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08760OsAffx.5755.1.S1_at11/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08760Os.57479.1.S1_x_at1/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08770NANA8+5077283..5083369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08780OsAffx.21897.5.S1_x_at4/118+5083681..5086621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08790OsAffx.16901.1.S1_at11/118+5088060..5089137Ubiquitin family protein
LOC_Os08g08800OsAffx.29108.1.S1_at11/118+5090474..5093058hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5755.1.S1_at--60--5211Chr08:5075692..5075716 (25 bp)
GAATTGTGGATCTCAGGCCTCTACA
LOC_Os08g08760
OsAffx.5755.1.S1_at--550--8751Chr08:5075620..5075644 (25 bp)
TGTACCGGACATCTTCATTGAGCTC
LOC_Os08g08760
OsAffx.5755.1.S1_at--151--10551Chr08:5075607..5075631 (25 bp)
TTCATTGAGCTCTGCATTGGTCGTC
LOC_Os08g08760
OsAffx.5755.1.S1_at--435--9071Chr08:5075595..5075619 (25 bp)
TGCATTGGTCGTCGCAGTCCAGCAC
LOC_Os08g08760
OsAffx.5755.1.S1_at--86--3311Chr08:5075561..5075584 (24 bp)
CACAACATTGCCTCTTGCTTGCTGC
LOC_Os08g08760
OsAffx.5755.1.S1_at--1034--5091Chr08:5075473..5075497 (25 bp)
GCACTGCCGACTTGGTCTAGAGTAC
LOC_Os08g08760
OsAffx.5755.1.S1_at--658--1171Chr08:5075453..5075477 (25 bp)
AGTACCAATCTTATTCGAGCTCCGG
LOC_Os08g08760
OsAffx.5755.1.S1_at--511--9071Chr08:5075387..5075411 (25 bp)
TGCTTCTACTAGAGTTTGCCGTCAA
LOC_Os08g08760
OsAffx.5755.1.S1_at--304--10771Chr08:5073376..5073400 (25 bp)
TTGTGAAAACCCTGACCGGCAAGTC
LOC_Os08g08760
OsAffx.5755.1.S1_at--756--7511Chr08:5073338..5073362 (25 bp)
GTGGAGTCATCCGACACAATCGACA
LOC_Os08g08760
OsAffx.5755.1.S1_at--1149--4051Chr08:5073237..5073261 (25 bp)
CGAGGAAGGACGCACCCTTGCTGAC
LOC_Os08g08760
Target Sequence 
GAATTGTGGATCTCAGGCCTCTACAAGGCCTCCTCCACCACCCTCCAAGAGCCCGTCCTACATCAACCCCTCTGTACCGG
ACATCTTCATTGAGCTCTGCATTGGTCGTCGCAGTCCAGCACCCCGACTATCCACAACATTGCCTCTTGCTTGCTGCCAC
CGAGTTTCCTCTGTCTATCGCTCCCGATGGCACTGCCGACTTGGTCTAGAGTACCAATCTTATTCGAGCTCCGGTTGCCA
CCGACCCCATGTCCTCGCTCTGCCTCGTCCCCCGCTGCTTCTACTAGAGTTTGCCGTCAAGATGCAGATCTTTGTGAAAA
CCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCATCCGACACAATCGACAATGTGAAGGCGAAGATCCAGGATAAG
GAGGGTATTCCCCCGGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAAGGACGCACCCTTGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis