Browse Element(s) Details


OsAffx.16904.1.S1_at

Description tigr:9636.m00842
TID=OsAffx.16904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0889010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08860Os.14866.1.S1_at11/118+5140640..5143972CRS2-associated factor 2, putative, expressed
LOC_Os08g08870OsAffx.19542.3.S1_x_at2/118+5146553..5150459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08880OsAffx.16903.1.S1_at11/118+5160866..5163221hypothetical protein
LOC_Os08g08890OsAffx.16904.1.S1_at10/118+5165347..5167682hypothetical protein
LOC_Os08g08900OsAffx.16905.1.S1_at6/118+5171144..5171931hypothetical protein
LOC_Os08g08910OsAffx.29110.1.S1_at8/118+5173503..5175177hypothetical protein
LOC_Os08g08920NANA8+5180531..5181354Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g08930OsAffx.16906.1.S1_at11/118+5187545..5187961hypothetical protein
LOC_Os08g08940NANA8+5189767..5193072transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16904.1.S1_at--6--7751Chr08:5167628..5167650 (23 bp)
GGTGTCTGGATCCATCAACGACGAA
LOC_Os08g08890
OsAffx.16904.1.S1_at--1072--7271Chr08:5167281..5167305 (25 bp)
GTGCCAATGTGGCATTACAAGTACA
LOC_Os08g08890
OsAffx.16904.1.S1_at--708--2411Chr08:5167254..5167274 (21 bp)
AAAACAATGTTCTTCCTACAGTGGA
LOC_Os08g08890
OsAffx.16904.1.S1_at--892--6351Chr08:5167055..5167079 (25 bp)
GATGCCATAGGCGACAAAGTTGTTG
LOC_Os08g08890
OsAffx.16904.1.S1_at--924--2191Chr08:5167042..5167066 (25 bp)
ACAAAGTTGTTGAGCGAGCAGCGGC
LOC_Os08g08890
OsAffx.16904.1.S1_at--408--6151Chr08:5166182..5166206 (25 bp)
GATAAAACCACCATTCAAAGCCCTC
LOC_Os08g08890
OsAffx.16904.1.S1_at--155--9511Chr08:5166064..5166088 (25 bp)
TCTAAGCCTGCACATGCGACGAAGA
LOC_Os08g08890
OsAffx.16904.1.S1_at--390--5031Chr08:5166024..5166048 (25 bp)
GCAGTATCAAGCAACCGGAGCTGGT
LOC_Os08g08890
OsAffx.16904.1.S1_at--129--491Chr08:5165935..5165959 (25 bp)
ATCGGGTTCCAACGAGACCTTGTTG
LOC_Os08g08890
OsAffx.16904.1.S1_at--66--5851NONE
GACCTTGTTGATCTAGATGGAGCTA
NONE
OsAffx.16904.1.S1_at--577--8071Chr08:5165382..5165406 (25 bp)
GGAGCTAATGCTTTGGCCATGGAAG
LOC_Os08g08890
Target Sequence 
GGTGTCTGGATCCATCAACGACGAAAGGACATTGGTTTCATCATGTGGGGTGCCAATGTGGCATTACAAGTACATGAGAA
AAAACAATGTTCTTCCTACAGTGGATACGAGCCCCCATGAAGATGCCATAGGCGACAAAGTTGTTGAGCGAGCAGCGGCG
GCAGTCGGCAAAGGCGAGCTAGGCAGGATAAAACCACCATTCAAAGCCCTCGCCCGCCGCCTCTACCACCGAGCACCGTC
CTTCTCCGATCCCGACGATGACCCTCCGTTCACACGGGTCACGGAGTGCCCGCCTCGACCTGCCTCTAAGCCTGCACATG
CGACGAAGAAGAAGAACCAGGGCGGCAGTATCAAGCAACCGGAGCTGGTGCGCTCCGACCTCCCGTTCAACTTCCGGTAC
TCCTACTCAAAGACGGACCCGGCGTGGAGGCCCATCGGGTTCCAACGAGACCTTGTTGATCTAGATGGAGCTAATGCTTT
GGCCATGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis