Browse Element(s) Details


OsAffx.17067.1.S1_at

Description tigr:9636.m01868
TID=OsAffx.17067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1904011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19000OsAffx.5869.1.S1_at11/118+11333557..11336250hypothetical protein
LOC_Os08g19010Os.54523.1.S1_at1/118+11343073..11344136hypothetical protein
LOC_Os08g19010OsAffx.13987.1.S1_at1/118+11343073..11344136hypothetical protein
LOC_Os08g19020OsAffx.5870.1.S1_at11/118+11350287..11350880hypothetical protein
LOC_Os08g19030OsAffx.29269.1.S1_at11/118+11355391..11356794hypothetical protein
LOC_Os08g19040OsAffx.17067.1.S1_at11/118+11357517..11358381hypothetical protein
LOC_Os08g19050NANA8+11362595..11364229hypothetical protein
LOC_Os08g19060OsAffx.5871.1.S1_at11/118+11372447..11375356retrotransposon, putative, centromere-specific
LOC_Os08g19070OsAffx.22908.1.S1_at1/118+11377703..11377975hypothetical protein
LOC_Os08g19080NANA8+11381049..11383349Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17067.1.S1_at--1147--6211Chr08:11358298..11358322 (25 bp)
GAGGCCATTGCCTATCACGGAGATG
LOC_Os08g19040
OsAffx.17067.1.S1_at--670--9751Chr08:11358250..11358274 (25 bp)
TAATGCTATACTCCATCGACTCCCG
LOC_Os08g19040
OsAffx.17067.1.S1_at--140--411Chr08:11358129..11358153 (25 bp)
ATCATGCCTAAGGACGTCCTTGACA
LOC_Os08g19040
OsAffx.17067.1.S1_at--138--7271Chr08:11358114..11358138 (25 bp)
GTCCTTGACAAGCTGAACTACATAG
LOC_Os08g19040
OsAffx.17067.1.S1_at--629--10631Chr08:11357819..11357843 (25 bp)
TTCGACTTCAGTCCGAGGATGGAGC
LOC_Os08g19040
OsAffx.17067.1.S1_at--584--8091Chr08:11357768..11357792 (25 bp)
GGACCAAATCCGCAGAACATCAGAG
LOC_Os08g19040
OsAffx.17067.1.S1_at--565--1551Chr08:11357731..11357755 (25 bp)
AGCTTCCAAAGACGGACAGCCTCAT
LOC_Os08g19040
OsAffx.17067.1.S1_at--870--7071Chr08:11357673..11357697 (25 bp)
GTCAATGAGTAGACCCCGTCCAAAG
LOC_Os08g19040
OsAffx.17067.1.S1_at--928--3291Chr08:11357641..11357665 (25 bp)
CACTTAAAACTGGTGCGCAGGCCAA
LOC_Os08g19040
OsAffx.17067.1.S1_at--681--8431Chr08:11357622..11357646 (25 bp)
GGCCAAGCAGCCTGTGAATCCGACT
LOC_Os08g19040
OsAffx.17067.1.S1_at--330--5251Chr08:11357607..11357631 (25 bp)
GAATCCGACTCGCAAGAAGCTGCCG
LOC_Os08g19040
Target Sequence 
GAGGCCATTGCCTATCACGGAGATGGTAAAACTCATGGAGGAGTGTAGTAATGCTATACTCCATCGACTCCCGGAGAAGA
AGAAAGATCTGGGATGTCCCACAATCACATGCTCGATTGGGACACAACACTTCGACCAGGTCCTCTACGACCTTGGAGCC
AGTGTCAACATCATGCCTAAGGACGTCCTTGACAAGCTGAACTACATAGTACGGATCAATGGGAAGGAGGAGAAATTCGA
CTTCAGTCCGAGGATGGAGCAATGCTCGATGGTCAAGATCAAGTATGGACCAAATCCGCAGAACATCAGAGAGGTCGAAG
TGAAGCTTCCAAAGACGGACAGCCTCATTGCCTTCATGAAGAACTTATTAGAGAAGGAAGCGTCAATGAGTAGACCCCGT
CCAAAGAAGGCACCACTTAAAACTGGTGCGCAGGCCAAGCAGCCTGTGAATCCGACTCGCAAGAAGCTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis