Browse Element(s) Details


OsAffx.17068.1.S1_at

Description tigr:9636.m01877
TID=OsAffx.17068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1913011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19120NANA8+11423984..11426286retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19130OsAffx.17068.1.S1_at11/118+11435333..11435794hypothetical protein
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17068.1.S1_at--75--291Chr08:11435367..11435391 (25 bp)
AGGCGGTGGACTCTCAAAGCACGTC
LOC_Os08g19130
OsAffx.17068.1.S1_at--160--2351Chr08:11435382..11435406 (25 bp)
AAAGCACGTCGCAGAACAACGGCGA
LOC_Os08g19130
OsAffx.17068.1.S1_at--280--2211Chr08:11435397..11435421 (25 bp)
ACAACGGCGAGTACTTGTTATTGGC
LOC_Os08g19130
OsAffx.17068.1.S1_at--1124--7971Chr08:11435439..11435532 (25 bp)
GGATGCGTACTCGACGGTCACATAC
LOC_Os08g19130
OsAffx.17068.1.S1_at--204--7831Chr08:11435523..11435547 (25 bp)
GGTCACATACCGGTCCAATGGCGAT
LOC_Os08g19130
OsAffx.17068.1.S1_at--634--7271Chr08:11435535..11435559 (25 bp)
GTCCAATGGCGATCAGGGCTTCTTC
LOC_Os08g19130
OsAffx.17068.1.S1_at--357--9571Chr08:11435555..11435579 (25 bp)
TCTTCGCGGGCGAGCCTTGCTAAGA
LOC_Os08g19130
OsAffx.17068.1.S1_at--385--5871Chr08:11435566..11435590 (25 bp)
GAGCCTTGCTAAGACGCTTGTGTCG
LOC_Os08g19130
OsAffx.17068.1.S1_at--337--2771Chr08:11435576..11435600 (25 bp)
AAGACGCTTGTGTCGTTCTACCTGC
LOC_Os08g19130
OsAffx.17068.1.S1_at--739--9971Chr08:11435594..11435618 (25 bp)
TACCTGCTCGCTAGTCGGCTTGGCA
LOC_Os08g19130
OsAffx.17068.1.S1_at--130--9631Chr08:11435740..11435764 (25 bp)
TCATGTACCTCCAGTGTGGTGGTGT
LOC_Os08g19130
Target Sequence 
AGGCGGTGGACTCTCAAAGCACGTCGCAGAACAACGGCGAGTACTTGTTATTGGCGGTGGTGACGAGCATCGGGATGCGT
ACTCGACGGTCACATACCGGTCCAATGGCGATCAGGGCTTCTTCGCGGGCGAGCCTTGCTAAGACGCTTGTGTCGTTCTA
CCTGCTCGCTAGTCGGCTTGGCATCGACGGAGCTGGCCACATCCAAATCGACTACACCGGTCATGTACCTCCAGTGTGGT
GGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis