Browse Element(s) Details


Os.7479.1.A1_at

Description gb:AU101181
DB_XREF= gi:9865431
DB_XREF=AU101181
CLONE=E2236
TID=Os.7479.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7479 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_566359.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1917011/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19130OsAffx.17068.1.S1_at11/118+11435333..11435794hypothetical protein
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7479.1.A1_at--639--4311Chr08:11457093..11457117 (25 bp)
CCTTGACTGCGGTGAGGCGACCCAA
LOC_Os08g19170
Os.7479.1.A1_at--953--9131Chr08:11457086..11457110 (25 bp)
TGCGGTGAGGCGACCCAAGTCAATG
LOC_Os08g19170
Os.7479.1.A1_at--630--6871Chr08:11457041..11457065 (25 bp)
GTATTAATACCATATGTGCCTTCTA
LOC_Os08g19170
Os.7479.1.A1_at--914--771Chr08:11457028..11457052 (25 bp)
ATGTGCCTTCTATCTATCTATGTTA
LOC_Os08g19170
Os.7479.1.A1_at--371--9551Chr08:11457012..11457036 (25 bp)
TCTATGTTATCTATGTTATGTACCT
LOC_Os08g19170
Os.7479.1.A1_at--8--10131Chr08:11456996..11457020 (25 bp)
TATGTACCTTTTACAGCCGCTTGAG
LOC_Os08g19170
Os.7479.1.A1_at--399--8311Chr08:11456882..11456906 (25 bp)
GGCTGTAGGCAGTAGGTTCTATCTT
LOC_Os08g19170
Os.7479.1.A1_at--371--8271Chr08:11456875..11456899 (25 bp)
GGCAGTAGGTTCTATCTTGTTTACA
LOC_Os08g19170
Os.7479.1.A1_at--606--431Chr08:11456862..11456886 (25 bp)
ATCTTGTTTACATTGCGGCATTTCA
LOC_Os08g19170
Os.7479.1.A1_at--665--4951Chr08:11456845..11456869 (25 bp)
GCATTTCACATTTTTCATTCCCTGT
LOC_Os08g19170
Os.7479.1.A1_at--693--91Chr08:11456829..11456853 (25 bp)
ATTCCCTGTTGTTTTGTTCAATTCT
LOC_Os08g19170
Target Sequence 
CCTTGACTGCGGTGAGGCGACCCAAGTCAATGGGGCTGGGAGCTAAGAATAAGTATTAATACCATATGTGCCTTCTATCT
ATCTATGTTATCTATGTTATGTACCTTTTACAGCCGCTTGAGTTTGATAACCTAGTTGTATATATGCTAGGAGAGCATAA
CCCNNNNGGCCGCGGCAAACAGCACGCGAAATCGTGGGTTCCGATGCCCCTGGCTGTAGGCAGTAGGTTCTATCTTGTTT
ACATTGCGGCATTTCACATTTTTCATTCCCTGTTGTTTTGTTCAATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7479.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis