Browse Element(s) Details


OsAffx.17089.1.S1_at

Description tigr:9636.m02029
TID=OsAffx.17089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2062010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20590Os.20602.2.S1_x_at10/118+12360573..12362738hAT family dimerisation domain containing protein
LOC_Os08g20610NANA8+12375372..12377579pentatricopeptide, putative
LOC_Os08g20620OsAffx.17089.1.S1_at10/118+12378206..12380444hypothetical protein
LOC_Os08g20630NANA8+12387438..12387656hypothetical protein
LOC_Os08g20644OsAffx.17091.1.S1_at11/118+12401693..12402157expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17089.1.S1_at--1096--1411Chr08:12380287..12380311 (25 bp)
AGAAAGAGTCCTATCGCCATGGCGC
LOC_Os08g20620
OsAffx.17089.1.S1_at--336--9771NONE
TAAGTCCAGAGCACTCGAATCGGCC
NONE
OsAffx.17089.1.S1_at--998--9351Chr08:12378630..12378654 (25 bp)
TCGAATCGGCCATGGTCGGAAGCGC
LOC_Os08g20620
OsAffx.17089.1.S1_at--80--10371Chr08:12378601..12378625 (25 bp)
TTTTTCCTCCACACTAGGTGCTTAG
LOC_Os08g20620
OsAffx.17089.1.S1_at--969--9071Chr08:12378583..12378607 (25 bp)
TGCTTAGTGCTCGAGGAAGGCCAAC
LOC_Os08g20620
OsAffx.17089.1.S1_at--796--5291Chr08:12378568..12378592 (25 bp)
GAAGGCCAACATCTTGGCAGCTCAA
LOC_Os08g20620
OsAffx.17089.1.S1_at--556--2651Chr08:12378535..12378559 (25 bp)
AAGCCAACAGAAGCTCTGTGCTCGA
LOC_Os08g20620
OsAffx.17089.1.S1_at--716--8691Chr08:12378519..12378543 (25 bp)
TGTGCTCGAGCTACAGGCCATCTTG
LOC_Os08g20620
OsAffx.17089.1.S1_at--1050--9151Chr08:12378446..12378470 (25 bp)
TGCCCTCCAGATTGTTCTTGCAGCT
LOC_Os08g20620
OsAffx.17089.1.S1_at--1073--1231Chr08:12378371..12378395 (25 bp)
AGTTGCTGCCGAGATCGTTCACCAT
LOC_Os08g20620
OsAffx.17089.1.S1_at--960--6971Chr08:12378321..12378345 (25 bp)
GTACCATGGTGATTTCTTGTGCAAA
LOC_Os08g20620
Target Sequence 
AGAAAGAGTCCTATCGCCATGGCGCCGTGATGCGCCAAGGAGAACGAGAGGTATTTGGGTTTTCTGTTTTCTATCTGATT
AAGTCCAGAGCACTCGAATCGGCCATGGTCGGAAGCGCCGCGTTTTTCCTCCACACTAGGTGCTTAGTGCTCGAGGAAGG
CCAACATCTTGGCAGCTCAACCACGCTCAAGCCAACAGAAGCTCTGTGCTCGAGCTACAGGCCATCTTGCCTCCACGGCT
CCATCCCTCTCTCCCAGAGATCAAACACCACTGCTGCTGCCCTCCAGATTGTTCTTGCAGCTGCCCTCGAGTTCACTCCC
CAGTCACAATCGAGCACGTCAGCTGCCACCACAGTTGCTGCCGAGATCGTTCACCATGTCACCCTCCAGCCCGCCTGCCA
CTGTACCATGGTGATTTCTTGTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis