Browse Element(s) Details


OsAffx.17155.1.S1_at

Description tigr:9636.m02525
TID=OsAffx.17155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cellulose synthase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2571011/11cellulose synthase D, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25670Os.54366.1.S1_at5/118+15487160..15489689hypothetical protein
LOC_Os08g25680NANA8+15491443..15493156hypothetical protein
LOC_Os08g25690NANA8+15496856..15498109expressed protein
LOC_Os08g25700Os.15734.1.S1_at11/118+15504916..15509053expressed protein
LOC_Os08g25710OsAffx.17155.1.S1_x_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25710OsAffx.17155.1.S1_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25720Os.6055.1.S1_at11/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25720Os.6055.3.S1_x_at10/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25734OsAffx.29350.1.S1_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25734Os.178.1.S1_a_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17155.1.S1_at--719--9271Chr08:15510244..15510268 (25 bp)
TCCGGCTTCTTCATCGTCCAGAAGC
LOC_Os08g25710
OsAffx.17155.1.S1_at--268--9571Chr08:15510237..15510261 (25 bp)
TCTTCATCGTCCAGAAGCTCGACAT
LOC_Os08g25710
OsAffx.17155.1.S1_at--921--2091Chr08:15509889..15509913 (25 bp)
ACATCTACGCGGACCTCTACATCGT
LOC_Os08g25710
OsAffx.17155.1.S1_at--172--3711Chr08:15509885..15509909 (25 bp)
CTACGCGGACCTCTACATCGTCAAG
LOC_Os08g25710
OsAffx.17155.1.S1_at--110--1111Chr08:15509862..15509886 (25 bp)
AGTGGTCGTCGCTGCTGATCCCGCC
LOC_Os08g25710
OsAffx.17155.1.S1_at--412--4151Chr08:15509841..15509865 (25 bp)
CGCCCATCACCATCGGGATGGTGAA
LOC_Os08g25710
OsAffx.17155.1.S1_at--246--4331Chr08:15509832..15509856 (25 bp)
CCATCGGGATGGTGAACATCATCGC
LOC_Os08g25710
OsAffx.17155.1.S1_at--657--10631Chr08:15509800..15509824 (25 bp)
TTCGCCTTCGCGAGGACCATCTACA
LOC_Os08g25710
OsAffx.17155.1.S1_at--1112--10611Chr08:15509794..15509818 (25 bp)
TTCGCGAGGACCATCTACAGCGACA
LOC_Os08g25710
OsAffx.17155.1.S1_at--978--6171Chr08:15509789..15509813 (25 bp)
GAGGACCATCTACAGCGACAACCCG
LOC_Os08g25710
OsAffx.17155.1.S1_at--972--7171Chr08:15509650..15509674 (25 bp)
GTCTGGTCGGGCCTCCTCTCAATCA
LOC_Os08g25710
Target Sequence 
TCCGGCTTCTTCATCGTCCAGAAGCTCGACATCGCCTTCCTTTGCTACCTCCTCACCATGACCATCACCCTCGTCGCCCT
CGGCATCCTCGAGGGGTTGCTGAAGGTGATGGCCGGGATAGAGATCTCCTTCACGCTGACGGCGAAGGCGGCGGCGGACG
ACAACGAGGACATCTACGCGGACCTCTACATCGTCAAGTGGTCGTCGCTGCTGATCCCGCCCATCACCATCGGGATGGTG
AACATCATCGCCATCGCCTTCGCCTTCGCGAGGACCATCTACAGCGACAACCCGCGGTGGGGGAAGTTCATCGGCGGCGG
CTTCTTCAGCTTCTGGGTGCTCGCCCACCTCAACCCCTTCGCCAAGGGCCTCATGGGGCGGCGCGGCAAGACGCCCACCA
TCGTCTTCGTCTGGTCGGGCCTCCTCTCAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis