Browse Element(s) Details


Os.15734.1.S1_at

Description gb:AK065348.1
DB_XREF= gi:32975366
TID=Os.15734.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013009K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013009K02, full insert sequence.
FL= gb:AK065348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2570011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25660OsAffx.31753.1.S1_s_at11/118+15478482..15481342hAT family dimerisation domain containing protein
LOC_Os08g25660OsAffx.31753.4.S1_s_at2/118+15478482..15481342hAT family dimerisation domain containing protein
LOC_Os08g25670Os.54366.1.S1_at5/118+15487160..15489689hypothetical protein
LOC_Os08g25680NANA8+15491443..15493156hypothetical protein
LOC_Os08g25690NANA8+15496856..15498109expressed protein
LOC_Os08g25700Os.15734.1.S1_at11/118+15504916..15509053expressed protein
LOC_Os08g25710OsAffx.17155.1.S1_x_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25710OsAffx.17155.1.S1_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25720Os.6055.1.S1_at11/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25720Os.6055.3.S1_x_at10/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25734OsAffx.29350.1.S1_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25734Os.178.1.S1_a_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15734.1.S1_at--1110--7631Chr08:15508472..15508496 (25 bp)
GGGACCTTCATTGTATCTTTTGCTG
LOC_Os08g25700
Os.15734.1.S1_at--710--5051Chr08:15508521..15508545 (25 bp)
GCAGCAACAGGTCCATCAGATGATA
LOC_Os08g25700
Os.15734.1.S1_at--193--2991Chr08:15508726..15508750 (25 bp)
AATGTCCTTACTCAGCATGGTCAGC
LOC_Os08g25700
Os.15734.1.S1_at--1122--4991Chr08:15508740..15508764 (25 bp)
GCATGGTCAGCATCTGAATTCGTCA
LOC_Os08g25700
Os.15734.1.S1_at--1074--1471Chr08:15508799..15508823 (25 bp)
AGCAATGCTTAAATCCCTGGTGAAC
LOC_Os08g25700
Os.15734.1.S1_at--849--8611Chr08:15508816..15508840 (25 bp)
TGGTGAACATTCTGCATTCTCCCCA
LOC_Os08g25700
Os.15734.1.S1_at--198--10591Chr08:15508832..15508856 (25 bp)
TTCTCCCCAGCGTACATATACAACT
LOC_Os08g25700
Os.15734.1.S1_at--251--331Chr08:15508849..15508873 (25 bp)
ATACAACTGGTAGGACCTTTTGCTA
LOC_Os08g25700
Os.15734.1.S1_at--1031--1731Chr08:15508863..15508887 (25 bp)
ACCTTTTGCTACTGTTGTCCATGTA
LOC_Os08g25700
Os.15734.1.S1_at--754--2491Chr08:15508992..15509016 (25 bp)
AACAGGATTCTTTTGGCACCAACTA
LOC_Os08g25700
Os.15734.1.S1_at--695--3591Chr08:15509029..15509053 (25 bp)
CATTGCAACAGGTGTTTACTGCTCT
LOC_Os08g25700
Target Sequence 
GGGACCTTCATTGTATCTTTTGCTGAGGCCATCACTCTCTTCTCTGCTAGCAGCAACAGGTCCATCAGATGATAAAANCA
CAGTAATNACAATTATGAAGCTGAGTATTGNATGAGGNTTTTGGTTACGAGGAGATGACATGGTAGAAAGGTTAAGAACC
ACTTATGGAAATTGGATTGGACAGATTTAGATGCCAATCTGGNGCATTCCACAAAGTTGACTTGTTAGTAATGCATTTGA
ATGGCAAAAGTATGAATAATGTCCTTACTCAGCATGGTCAGCATCTGAATTCGTCAGAAAATTTTCAACTTGGAAGGCAT
TGGAGTAATCAGCAATGCTTAAATCCCTGGTGAACATTCTGCATTCTCCCCAGCGTACATATACAACTGGTAGGACCTTT
TGCTACTGTTGTCCATGTATAGAAAATTTTGACCTTGTGACAGTGGTCCATATGTAAGAAGCCATGGTGCTAGTACATGA
TCATGAATGATAGGCTACAAATTTATTGTTACAGCCAAAGAATAACAGGATTCTTTTGGCACCAACTACACTTAGAATTA
CATTGCAACAGGTGTTTACTGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis