Browse Element(s) Details


OsAffx.29350.1.S1_at

Description tigr:9636.m02528
TID=OsAffx.29350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2573411/11Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25700Os.15734.1.S1_at11/118+15504916..15509053expressed protein
LOC_Os08g25710OsAffx.17155.1.S1_x_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25710OsAffx.17155.1.S1_at11/118+15509564..15513097cellulose synthase D, putative, expressed
LOC_Os08g25720Os.6055.1.S1_at11/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25720Os.6055.3.S1_x_at10/118+15525650..15531026Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os08g25734OsAffx.29350.1.S1_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25734Os.178.1.S1_a_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25750NANA8+15543967..15547038retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25760OsAffx.10633.1.S1_at5/118+15547807..15550262retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25770OsAffx.17156.1.S1_at10/118+15554569..15555717hypothetical protein
LOC_Os08g25780OsAffx.29351.1.S1_at10/118+15557429..15558641hypothetical protein
LOC_Os08g25780Os.29923.1.S1_at1/118+15557429..15558641hypothetical protein
LOC_Os08g25799Os.15464.1.S1_at11/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25799Os.51485.1.S1_at10/118+15562691..15571116myb family transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019252biological_processstarch biosynthesis
GO:0010170cellular_componentglucose-1-phosphate adenylyltransferase complex
GO:0030931cellular_componentADPG pyrophosphorylase complex (sensu Eukaryota)
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29350.1.S1_at--138--4131Chr08:15539067..15539507 (25 bp)
CGCAGTGTCGATGAGTTTGGTGTAT
LOC_Os08g25734
OsAffx.29350.1.S1_at--540--6951Chr08:15539031..15539055 (25 bp)
GTAGAATATGAGTCCTGCAAAAGCA
LOC_Os08g25734
OsAffx.29350.1.S1_at--105--2411Chr08:15538989..15539013 (25 bp)
AAAAATGGCCCATGTGCCATCAATA
LOC_Os08g25734
OsAffx.29350.1.S1_at--101--4431Chr08:15538974..15538998 (25 bp)
GCCATCAATAATTCAAGGTGCCCGT
LOC_Os08g25734
OsAffx.29350.1.S1_at--845--3211Chr08:15538961..15538985 (25 bp)
CAAGGTGCCCGTTGATGAGTAACAG
LOC_Os08g25734
OsAffx.29350.1.S1_at--639--2071Chr08:15538935..15538959 (25 bp)
ACATTTGATTGTGTCACCCTACCAC
LOC_Os08g25734
OsAffx.29350.1.S1_at--409--2471Chr08:15538909..15538933 (25 bp)
AACACACATGGAAGGCCATTGCATT
LOC_Os08g25734
OsAffx.29350.1.S1_at--125--10731Chr08:15538891..15538915 (25 bp)
TTGCATTCCCTATAAGGACATCATG
LOC_Os08g25734
OsAffx.29350.1.S1_at--827--8131Chr08:15538876..15538900 (25 bp)
GGACATCATGGTCATTCCAAAATGT
LOC_Os08g25734
OsAffx.29350.1.S1_at--725--2291Chr08:15538857..15538881 (25 bp)
AAATGTACTGACACCTGCTCAATGC
LOC_Os08g25734
OsAffx.29350.1.S1_at--480--9091Chr08:15538842..15538866 (25 bp)
TGCTCAATGCAGACAAAAACCCCTT
LOC_Os08g25734
Target Sequence 
CGCAGTGTCGATGAGTTTGGTGTATGTGTGTCCATAGTAGAATATGAGTCCTGCAAAAGCAAACATCATCATGCCAACAA
AAATGGCCCATGTGCCATCAATAATTCAAGGTGCCCGTTGATGAGTAACAGAACATTTGATTGTGTCACCCTACCACAAA
CACACATGGAAGGCCATTGCATTCCCTATAAGGACATCATGGTCATTCCAAAATGTACTGACACCTGCTCAATGCAGACA
AAAACCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis