Browse Element(s) Details


OsAffx.29351.1.S1_at

Description tigr:9636.m02532
TID=OsAffx.29351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2578010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25734OsAffx.29350.1.S1_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25734Os.178.1.S1_a_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25750NANA8+15543967..15547038retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25760OsAffx.10633.1.S1_at5/118+15547807..15550262retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25770OsAffx.17156.1.S1_at10/118+15554569..15555717hypothetical protein
LOC_Os08g25780OsAffx.29351.1.S1_at10/118+15557429..15558641hypothetical protein
LOC_Os08g25780Os.29923.1.S1_at1/118+15557429..15558641hypothetical protein
LOC_Os08g25799Os.15464.1.S1_at11/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25799Os.51485.1.S1_at10/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25820OsAffx.5926.1.S1_at11/118+15579312..15583536transfactor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29351.1.S1_at--371--8652Chr09:7039957..7040072 (25 bp)
TGGGCATCCTCCCACCTGGATCTGG
NONE
OsAffx.29351.1.S1_at--7--8391NONE
GGCGAGAGCGTCGTCCAGTCTCTAG
NONE
OsAffx.29351.1.S1_at--368--7271Chr08:15558399..15558423 (25 bp)
GTCCAGTCTCTAGTCCATCGTGTGA
LOC_Os08g25780
OsAffx.29351.1.S1_at--140--3771Chr08:15558406..15558430 (25 bp)
CTCTAGTCCATCGTGTGAGATTAAT
LOC_Os08g25780
OsAffx.29351.1.S1_at--675--6051Chr08:15558422..15558446 (25 bp)
GAGATTAATTCTTGACCTCGGCCTC
LOC_Os08g25780
OsAffx.29351.1.S1_at--1012--2191Chr08:15558460..15558484 (25 bp)
ACAACAGCATTACAGCACGGCATCT
LOC_Os08g25780
OsAffx.29351.1.S1_at--1050--10471Chr08:15558469..15558493 (25 bp)
TTACAGCACGGCATCTCCATATGAA
LOC_Os08g25780
OsAffx.29351.1.S1_at--914--5091Chr08:15558474..15558498 (25 bp)
GCACGGCATCTCCATATGAAAAATG
LOC_Os08g25780
OsAffx.29351.1.S1_at--144--5532Chr08:15558491..15558515 (25 bp)
GAAAAATGCTTCTTCGGCATGGGAG
LOC_Os08g25780
OsAffx.29351.1.S1_at--232--10611Chr08:15558503..15558527 (25 bp)
TTCGGCATGGGAGCTTGACGAGGCT
LOC_Os08g25780
OsAffx.29351.1.S1_at--520--4211Chr08:15558576..15558600 (25 bp)
CCGCCGTTGCTTCGCTGGGAAAAGA
LOC_Os08g25780
Target Sequence 
TGGGCATCCTCCCACCTGGATCTGGCGGCGAGAGCGTCGTCCAGTCTCTAGTCCATCGTGTGAGATTAATTCTTGACCTC
GGCCTCGTCAACCTCTCCAACAACAGCATTACAGCACGGCATCTCCATATGAAAAATGCTTCTTCGGCATGGGAGCTTGA
CGAGGCTGGCGAGAGCGGAGGCCGAGGAGGTGCACACCGTGCCGTCCCCAAGCCGCCGCCGTTGCTTCGCTGGGAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis