Browse Element(s) Details


Os.29923.1.S1_at

Description gb:AK109653.1
DB_XREF= gi:32994862
TID=Os.29923.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D12, full insert sequence.
FL= gb:AK109653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3638011/11expressed protein
LOC_Os08g257801/11hypothetical protein
LOC_Os11g256501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36349NANA6+21340454..21341106NA
LOC_Os06g36360Os.14584.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360OsAffx.15775.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.14584.1.S1_s_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.16439.1.S1_at2/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36370NANA6+21351883..21352242hypothetical protein
LOC_Os06g36380Os.29923.1.S1_at11/116+21361860..21362651expressed protein
LOC_Os06g36390Os.38309.1.S1_at11/116+21371366..21373329expressed protein
LOC_Os06g36400OsAffx.15777.1.S1_at1/116+21372861..21376315HAD superfamily phosphatase containing protein, expressed
LOC_Os06g36410OsAffx.15778.1.S1_at10/116+21377262..21378337hypothetical protein
LOC_Os06g36420OsAffx.25936.1.S1_s_at8/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.7.S1_s_at7/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.2.S1_x_at4/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.5.S1_x_at2/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29923.1.S1_at--715--1491Chr06:21362220..21362244 (25 bp)
AGCTCGGGCGTAGCGACAACGACGA
LOC_Os06g36380
Os.29923.1.S1_at--1118--10372Chr06:21362425..21362449 (25 bp)
TTTTCACAATTTTTTCTCTTTTCAT
LOC_Os06g36380
Os.29923.1.S1_at--616--10571Chr06:21362438..21362462 (25 bp)
TTCTCTTTTCATGCGGTCGACTTAA
LOC_Os06g36380
Os.29923.1.S1_at--160--7233Chr06:21362453..21362477 (25 bp)
GTCGACTTAAGCGTCCGCATGCGAA
LOC_Os06g36380
Os.29923.1.S1_at--401--10454Chr11:14136265..14136284 (20 bp)
TTACGCTGGCCGCATGCAAAGATCG
LOC_Os11g25650
Os.29923.1.S1_at--950--5131Chr06:21362513..21362537 (25 bp)
GCAAAGATCGCCATATTTACAGACG
LOC_Os06g36380
Os.29923.1.S1_at--41--10493Chr12:4227989..4228012 (24 bp)
TTACAGACGATTTCGCGCATGCGGC
NONE
Os.29923.1.S1_at--1160--4699Chr12:26533717..26533741 (25 bp)
GCGGCTGGCCCAACCGCATGCGAAA
NONE
Os.29923.1.S1_at--939--572Chr06:21362566..21362590 (25 bp)
ATGCGAAAATCGTTATGGCCCGTTT
LOC_Os06g36380
Os.29923.1.S1_at--319--6791Chr06:21362577..21362601 (25 bp)
GTTATGGCCCGTTTGCGAAACTGAA
LOC_Os06g36380
Os.29923.1.S1_at--672--3851Chr06:21362597..21362621 (25 bp)
CTGAATCTGTAGTAGTGGCATATCT
LOC_Os06g36380
Target Sequence 
AGCTCGGGCGTAGCGACAACGACGACGACGGTAGGCGGCGGGGACGGCAGCGGTCTCAAGCAGCTGTGGCTGGAGTGGAT
CTGGGCGGGGTGGTTGTACCAGCGGCTAGCGACGGCGATGGCGACGACGGGAGCGGTGGCGGCGGCTGCGACGAACTCGG
GCGGCGGCGGCGCTAGTTTTACTTTGTTTTTTTTTAATTTTATTTTTTTCACAATTTTTTCTCTTTTCATGCGGTCGACT
TAAGCGTCCGCATGCGAAAATCAGATTTTCGCATGCGGTTACGCTGGCCGCATGCAAAGATCGCCATATTTACAGACGAT
TTCGCGCATGCGGCTGGCCCAACCGCATGCGAAAATCGTTATGGCCCGTTTGCGAAACTGAATCTGTAGTAGTGGCATAT
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis