CREP Browser

Os.16439.1.S1_at

Description

gb:BI802863
DB_XREF= gi:16575567
DB_XREF=H092C01
CLONE=H092C01
TID=Os.16439.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16439 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g36360	2/11	Poly polymerase central domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g36340	OsAffx.27961.1.S1_at	11/11	6	+	21325481..21329847	hypothetical protein
LOC_Os06g36340	OsAffx.27960.1.S1_at	11/11	6	+	21325481..21329847	hypothetical protein
LOC_Os06g36349	NA	NA	6	+	21340454..21341106	NA
LOC_Os06g36360	Os.14584.1.S1_at	11/11	6	+	21342404..21349084	Poly polymerase central domain containing protein, expressed
LOC_Os06g36360	OsAffx.15775.1.S1_at	11/11	6	+	21342404..21349084	Poly polymerase central domain containing protein, expressed
LOC_Os06g36360	Os.14584.1.S1_s_at	11/11	6	+	21342404..21349084	Poly polymerase central domain containing protein, expressed
LOC_Os06g36360	Os.16439.1.S1_at	2/11	6	+	21342404..21349084	Poly polymerase central domain containing protein, expressed
LOC_Os06g36370	NA	NA	6	+	21351883..21352242	hypothetical protein
LOC_Os06g36380	Os.29923.1.S1_at	11/11	6	+	21361860..21362651	expressed protein
LOC_Os06g36390	Os.38309.1.S1_at	11/11	6	+	21371366..21373329	expressed protein
LOC_Os06g36400	OsAffx.15777.1.S1_at	1/11	6	+	21372861..21376315	HAD superfamily phosphatase containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016779	molecular_function	nucleotidyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.16439.1.S1_at--942--123	1	NONE	AGAATCCTGGGCTGAGGACCCCTAG	NONE
Os.16439.1.S1_at--374--887	1	NONE	TGAGGACCCCTAGATCTCGCAAGTT	NONE
Os.16439.1.S1_at--887--581	1	NONE	GACCCCTAGATCTCGCAAGTTTTTA	NONE
Os.16439.1.S1_at--835--641	1	NONE	GATCTCGCAAGTTTTTACAGAGCTT	NONE
Os.16439.1.S1_at--326--79	1	Chr06:21342626..21342652 (25 bp)	ATGTGTCTTTTGTCTTAACCGTGGA	LOC_Os06g36360
Os.16439.1.S1_at--688--713	1	Chr06:21342614..21342636 (22 bp)	GTCTTAACCGTGGACATCTAGCTTC	LOC_Os06g36360
Os.16439.1.S1_at--840--757	1	NONE	GGGCTGATGAACTTGGTATGCATCT	NONE
Os.16439.1.S1_at--395--691	1	NONE	GTATGCATCTGTGGTCGACCTTGCT	NONE
Os.16439.1.S1_at--656--859	1	NONE	TGGTCGACCTTGCTTTCAGAGATGC	NONE
Os.16439.1.S1_at--1078--583	1	NONE	GACCTTGCTTTCAGAGATGCCTCCC	NONE
Os.16439.1.S1_at--965--59	1	NONE	ATGCCTCCCTCTCTGTAGGTCTAGA	NONE

Target Sequence

AGAATCCTGGGCTGAGGACCCCTAGATCTCGCAAGTTTTTACAGAGCTTTGCTTGTGCTCCATAACGACATGTGTCTTTT
GTCTTAACCGTGGACATCTAGCTTCTGGCTTCATCATGTATGGGGCTGATGAACTTGGTATGCATCTGTGGTCGACCTTG
CTTTCAGAGATGCCTCCCTCTCTGTAGGTCTAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

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