Browse Element(s) Details


OsAffx.15777.1.S1_at

Description tigr:9634.m03458
TID=OsAffx.15777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=APS-AA2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g364001/11HAD superfamily phosphatase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36360Os.14584.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360OsAffx.15775.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.14584.1.S1_s_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.16439.1.S1_at2/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36370NANA6+21351883..21352242hypothetical protein
LOC_Os06g36380Os.29923.1.S1_at11/116+21361860..21362651expressed protein
LOC_Os06g36390Os.38309.1.S1_at11/116+21371366..21373329expressed protein
LOC_Os06g36400OsAffx.15777.1.S1_at1/116+21372861..21376315HAD superfamily phosphatase containing protein, expressed
LOC_Os06g36410OsAffx.15778.1.S1_at10/116+21377262..21378337hypothetical protein
LOC_Os06g36420OsAffx.25936.1.S1_s_at8/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.7.S1_s_at7/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.2.S1_x_at4/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.5.S1_x_at2/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36430NANA6+21390529..21391513hypothetical protein
LOC_Os06g36440NANA6+21391678..21393665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36450Os.5052.1.S1_at11/116+21396009..21398399Ferroportin1 family protein, expressed
LOC_Os06g36460OsAffx.27964.1.S1_at9/116+21399839..21400751hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15777.1.S1_at--463--3631Chr06:21372864..21372888 (25 bp)
CTTCCTTCTGAAAGCATCGTTTGGA
LOC_Os06g36400
OsAffx.15777.1.S1_at--775--8791Chr06:21372770..21372794 (25 bp)
TGTTGAAAAACCTCATCTCCATTTT
NONE
OsAffx.15777.1.S1_at--811--4271Chr06:21372733..21372757 (25 bp)
CCTGTACTGCCTTTCAACTAGCATC
NONE
OsAffx.15777.1.S1_at--1160--3531Chr06:21372593..21372617 (25 bp)
CATCGTCTTGCTGCAGGGCCCTGGA
NONE
OsAffx.15777.1.S1_at--516--4571Chr06:21372568..21372592 (25 bp)
GCGCGACGCGAATTCGACAACCGAT
NONE
OsAffx.15777.1.S1_at--129--4771Chr06:21372519..21372543 (25 bp)
GCTGCAGCTTCATCCTGGTGATGTA
NONE
OsAffx.15777.1.S1_at--526--6631Chr06:21372490..21372514 (25 bp)
GTTGTCTTCTTTGCAAGGTCTTGGA
NONE
OsAffx.15777.1.S1_at--508--10871Chr06:21372470..21372494 (25 bp)
TTGGACGCACCTGGCGTTGCAGAGC
NONE
OsAffx.15777.1.S1_at--982--8991Chr06:21372441..21372465 (25 bp)
TGAAGGATTGGGACTTCCCTTGGTA
NONE
OsAffx.15777.1.S1_at--320--10831Chr06:21372422..21372446 (25 bp)
TTGGTAGTACTTGGATAGCCCTGTC
NONE
OsAffx.15777.1.S1_at--658--9991Chr06:21372407..21372431 (25 bp)
TAGCCCTGTCCTGTAGCATGTGAAA
NONE
Target Sequence 
CTTCCTTCTGAAAGCATCGTTTGGAGGAGACCTGGAGACATTCTATATTTCTAGCTCCAGTGCAGCTGAGTGCTGATTGC
TGAAGAGTTCATTTTGTTGAAAAACCTCATCTCCATTTTTTTTTCAGTACCCCTGTACTGCCTTTCAACTAGCATCTTGA
CAGCTCTTTCTTGCTCTGTTGTGCAGGTGTGCTGCTGCTGCTGTGAAGAGGCTTGTGCTCCCTTGCTCTTGACAGCAATC
GATCGGACGAGCACCTCGTCGCCTTCTTCGCCATCGTCTTGCTGCAGGGCCCTGGAGCGCGACGCGAATTCGACAACCGA
TCCACGACTCCATGGCCTCTGCGCAGCTGCAGCTTCATCCTGGTGATGTAAGGGGTTGTCTTCTTTGCAAGGTCTTGGAC
GCACCTGGCGTTGCAGAGCGATGTGAAGGATTGGGACTTCCCTTGGTAGTACTTGGATAGCCCTGTCCTGTAGCATGTGA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis