Browse Element(s) Details


OsAffx.15778.1.S1_at

Description tigr:9634.m03459
TID=OsAffx.15778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3641010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36380Os.29923.1.S1_at11/116+21361860..21362651expressed protein
LOC_Os06g36390Os.38309.1.S1_at11/116+21371366..21373329expressed protein
LOC_Os06g36400OsAffx.15777.1.S1_at1/116+21372861..21376315HAD superfamily phosphatase containing protein, expressed
LOC_Os06g36410OsAffx.15778.1.S1_at10/116+21377262..21378337hypothetical protein
LOC_Os06g36420OsAffx.25936.1.S1_s_at8/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.7.S1_s_at7/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.2.S1_x_at4/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.5.S1_x_at2/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36430NANA6+21390529..21391513hypothetical protein
LOC_Os06g36440NANA6+21391678..21393665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36450Os.5052.1.S1_at11/116+21396009..21398399Ferroportin1 family protein, expressed
LOC_Os06g36460OsAffx.27964.1.S1_at9/116+21399839..21400751hypothetical protein
LOC_Os06g36470Os.35344.18.S1_x_at11/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470Os.35344.3.S1_x_at9/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470OsAffx.22940.5.S1_x_at3/116+21403279..21409326transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15778.1.S1_at--200--7351Chr06:21378184..21378208 (25 bp)
GTGAAGAGGCCGCATGGCGACGACG
LOC_Os06g36410
OsAffx.15778.1.S1_at--507--2791Chr06:21378156..21378180 (25 bp)
AAGAGGCGACACAGCGAAGAGCCAG
LOC_Os06g36410
OsAffx.15778.1.S1_at--451--2771NONE
AAGAGCCAGATGTTGGGCATTTCAT
NONE
OsAffx.15778.1.S1_at--435--6291Chr06:21377889..21377910 (22 bp)
GATGTTGGGCATTTCATACCTTGGG
LOC_Os06g36410
OsAffx.15778.1.S1_at--231--311Chr06:21377874..21377898 (25 bp)
ATACCTTGGGGCCTATGAGATCACC
LOC_Os06g36410
OsAffx.15778.1.S1_at--1033--8891Chr06:21377859..21377883 (25 bp)
TGAGATCACCTGCAGATAATATACG
LOC_Os06g36410
OsAffx.15778.1.S1_at--461--1271Chr06:21377846..21377870 (25 bp)
AGATAATATACGATCCTTGCCCCTA
LOC_Os06g36410
OsAffx.15778.1.S1_at--342--9911Chr06:21377823..21377847 (25 bp)
TACTCTGCTCATCAGCGGGTAGGAT
LOC_Os06g36410
OsAffx.15778.1.S1_at--413--3751Chr06:21377816..21377840 (25 bp)
CTCATCAGCGGGTAGGATGGACCTA
LOC_Os06g36410
OsAffx.15778.1.S1_at--897--6231Chr06:21377358..21377825 (25 bp)
GATGGACCTAGGTCCAAGAAACAGA
LOC_Os06g36410
OsAffx.15778.1.S1_at--980--5251Chr06:21377335..21377359 (25 bp)
GAATCCATAGATGGGAGGAGTCCTA
LOC_Os06g36410
Target Sequence 
GTGAAGAGGCCGCATGGCGACGACGACGAAGAGGCGACACAGCGAAGAGCCAGATGTTGGGCATTTCATACCTTGGGGCC
TATGAGATCACCTGCAGATAATATACGATCCTTGCCCCTACTCTGCTCATCAGCGGGTAGGATGGACCTAGGTCCAAGAA
ACAGAATCCATAGATGGGAGGAGTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis