Browse Element(s) Details

Os.38309.1.S1_at

Description

gb:AK068350.1
DB_XREF= gi:32978368
TID=Os.38309.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.38309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013142H05, full insert sequence.
FL= gb:AK068719.1 gb:AK068350.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g36390	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g36360	Os.14584.1.S1_at	11/11	6	+	21342404..21349084	Poly polymerase central domain containing protein, expressed
LOC_Os06g36360	OsAffx.15775.1.S1_at	11/11	6	+	21342404..21349084	Poly polymerase central domain containing protein, expressed
LOC_Os06g36360	Os.14584.1.S1_s_at	11/11	6	+	21342404..21349084	Poly polymerase central domain containing protein, expressed
LOC_Os06g36360	Os.16439.1.S1_at	2/11	6	+	21342404..21349084	Poly polymerase central domain containing protein, expressed
LOC_Os06g36370	NA	NA	6	+	21351883..21352242	hypothetical protein
LOC_Os06g36380	Os.29923.1.S1_at	11/11	6	+	21361860..21362651	expressed protein
LOC_Os06g36390	Os.38309.1.S1_at	11/11	6	+	21371366..21373329	expressed protein
LOC_Os06g36400	OsAffx.15777.1.S1_at	1/11	6	+	21372861..21376315	HAD superfamily phosphatase containing protein, expressed
LOC_Os06g36410	OsAffx.15778.1.S1_at	10/11	6	+	21377262..21378337	hypothetical protein
LOC_Os06g36420	OsAffx.25936.1.S1_s_at	8/11	6	+	21384989..21388027	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420	OsAffx.25936.7.S1_s_at	7/11	6	+	21384989..21388027	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420	OsAffx.25936.2.S1_x_at	4/11	6	+	21384989..21388027	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420	OsAffx.25936.5.S1_x_at	2/11	6	+	21384989..21388027	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36430	NA	NA	6	+	21390529..21391513	hypothetical protein
LOC_Os06g36440	NA	NA	6	+	21391678..21393665	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36450	Os.5052.1.S1_at	11/11	6	+	21396009..21398399	Ferroportin1 family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.38309.1.S1_at--496--103	1	Chr06:21372483..21372507 (25 bp)	AGGTGCGTCCAAGACCTTGCAAAGA	LOC_Os06g36390
Os.38309.1.S1_at--353--561	1	Chr06:21372509..21372533 (25 bp)	GACAACCCCTTACATCACCAGGATG	LOC_Os06g36390
Os.38309.1.S1_at--1034--793	1	Chr06:21372566..21372590 (25 bp)	GGATCGGTTGTCGAATTCGCGTCGC	LOC_Os06g36390
Os.38309.1.S1_at--153--923	1	Chr06:21372593..21372617 (25 bp)	TCCAGGGCCCTGCAGCAAGACGATG	LOC_Os06g36390
Os.38309.1.S1_at--959--941	1	Chr06:21372639..21372663 (25 bp)	TCGTCCGATCGATTGCTGTCAAGAG	LOC_Os06g36390
Os.38309.1.S1_at--881--593	1	Chr06:21372661..21372685 (25 bp)	GAGCAAGGGAGCACAAGCCTCTTCA	LOC_Os06g36390
Os.38309.1.S1_at--677--149	1	Chr06:21372696..21372720 (25 bp)	AGCACACCTGCACAACAGAGCAAGA	LOC_Os06g36390
Os.38309.1.S1_at--1117--149	1	Chr06:21372815..21372839 (25 bp)	AGCACTCAGCTGCACTGGAGCTAGA	LOC_Os06g36390
Os.38309.1.S1_at--1056--23	1	Chr06:21372841..21372865 (25 bp)	ATATAGAATGTCTCCAGGTCTCCTC	LOC_Os06g36390
Os.38309.1.S1_at--171--1033	1	Chr06:21372905..21372929 (25 bp)	TTTCTTCTGTGGATCATTGTGTCAT	LOC_Os06g36390
Os.38309.1.S1_at--1029--295	1	Chr06:21372942..21372966 (25 bp)	AATGGCTGAGCCGATGTTAGATACA	LOC_Os06g36390

Target Sequence

AGGTGCGTCCAAGACCTTGCAAAGAAGACAACCCCTTACATCACCAGGATGAAGCTGCAGCTGCGCAGAGGCCATGGAGT
CGTGGATCGGTTGTCGAATTCGCGTCGCGCTCCAGGGCCCTGCAGCAAGACGATGGCGAAGAAGGCGACGAGGTGCTCGT
CCGATCGATTGCTGTCAAGAGCAAGGGAGCACAAGCCTCTTCACAGCAGCAGCAGCACACCTGCACAACAGAGCAAGAAA
GAGCTGTCAAGATGCTAGTTGAAAGGCAGTACAGGGGTACTGAAAAAAAAATGGAGATGAGGTTTTTCAACAAAATGAAC
TCTTCAGCAATCAGCACTCAGCTGCACTGGAGCTAGAAATATAGAATGTCTCCAGGTCTCCTCCAAACGATGCTTTCAGA
AGGAAGTTTTGCTCAGTTTTCTTTTCTTCTGTGGATCATTGTGTCATTTTACTTGATAAAATGGCTGAGCCGATGTTAGA
TACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis