Browse Element(s) Details


OsAffx.17158.1.S1_s_at

Description tigr:9636.m02540
TID=OsAffx.17158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2585010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25830NANA8+15585233..15586174hypothetical protein
LOC_Os08g25839NANA8+15605622..15605860NA
LOC_Os08g25850OsAffx.17158.1.S1_s_at10/118+15610695..15612932expressed protein
LOC_Os08g25850OsAffx.17158.1.S1_at8/118+15610695..15612932expressed protein
LOC_Os08g25860OsAffx.17170.1.S1_at11/118+15616923..15621274hypothetical protein
LOC_Os08g25870NANA8+15626464..15629260retrotransposon protein, putative, unclassified
LOC_Os08g25880OsAffx.22603.1.S1_at3/118+15630769..15632947retrotransposon protein, putative, unclassified
LOC_Os08g25880OsAffx.31697.1.S1_at1/118+15630769..15632947retrotransposon protein, putative, unclassified
LOC_Os08g25890NANA8+15633340..15634122tetratricopeptide repeat, putative
LOC_Os08g25900OsAffx.17159.1.S1_x_at11/118+15635867..15638053PsbP family protein, expressed
LOC_Os08g25900OsAffx.17159.1.S1_at11/118+15635867..15638053PsbP family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17158.1.S1_s_at--271--5131Chr08:15611970..15611994 (25 bp)
GCAAAGAACGTGAAGTGTTGAAGAT
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--223--2871Chr08:15611962..15611982 (21 bp)
AAGTGTTGAAGATAGATTCGGAAAC
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--1136--1171NONE
AGATTCGGAAACTAAATCTAACCAG
NONE
OsAffx.17158.1.S1_s_at--892--5831Chr08:15611160..15611184 (25 bp)
GACCAAGAAAGCTTCGAGTAAACCT
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--424--2711Chr08:15611156..15611180 (25 bp)
AAGAAAGCTTCGAGTAAACCTGCTC
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--6--5571Chr08:15611154..15611178 (25 bp)
GAAAGCTTCGAGTAAACCTGCTCCG
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--188--2351Chr08:15611153..15611177 (25 bp)
AAAGCTTCGAGTAAACCTGCTCCGA
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--955--2691Chr08:15611152..15611176 (25 bp)
AAGCTTCGAGTAAACCTGCTCCGAA
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--952--4891Chr08:15611150..15611174 (25 bp)
GCTTCGAGTAAACCTGCTCCGAAGA
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--383--10611Chr08:15611148..15611172 (25 bp)
TTCGAGTAAACCTGCTCCGAAGAAG
LOC_Os08g25850
OsAffx.17158.1.S1_s_at--128--9351Chr08:15611147..15611171 (25 bp)
TCGAGTAAACCTGCTCCGAAGAAGA
LOC_Os08g25850
Target Sequence 
GCAAAGAACGTGAAGTGTTGAAGATAGATTCGGAAACTAAATCTAACCAGCCGCCGACCAAGAAAGCTTCGAGTAAACCT
GCTCCGAAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17158.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis