Browse Element(s) Details


OsAffx.31697.1.S1_at

Description tigr:9640.m01049
TID=OsAffx.31697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1108011/11retrotransposon protein, putative, unclassified
LOC_Os12g202701/11retrotransposon protein, putative, unclassified, expressed
LOC_Os08g258801/11retrotransposon protein, putative, unclassified
LOC_Os03g267041/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11030NANA12+5948647..5952521retrotransposon protein, putative, unclassified
LOC_Os12g11040OsAffx.19606.1.S1_at10/1112+5956927..5960227hypothetical protein
LOC_Os12g11050OsAffx.31695.1.S1_at11/1112+5961095..5962865hypothetical protein
LOC_Os12g11060OsAffx.19607.1.S1_at11/1112+5968170..5968650hypothetical protein
LOC_Os12g11070NANA12+5968953..5969336hypothetical protein
LOC_Os12g11080OsAffx.31697.1.S1_at11/1112+5972599..5974845retrotransposon protein, putative, unclassified
LOC_Os12g11090OsAffx.8338.1.S1_x_at1/1112+5975915..5976334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11100NANA12+5978774..5979511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11110NANA12+5979777..5983896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11130Os.45173.1.S1_x_at4/1112+5994022..5996613retrotransposon protein, putative, unclassified
LOC_Os12g11130OsAffx.16111.1.S1_at1/1112+5994022..5996613retrotransposon protein, putative, unclassified
LOC_Os12g11140OsAffx.20733.1.S1_x_at2/1112+5998351..5998839retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11150NANA12+5999530..6002049retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31697.1.S1_at--286--3471Chr12:5972630..5972654 (25 bp)
CAGGGTTCAAACCTCCTGTGAACAA
LOC_Os12g11080
OsAffx.31697.1.S1_at--442--3271Chr12:5972652..5972676 (25 bp)
CAAAACAGGTGCCAAAAATCCATCA
LOC_Os12g11080
OsAffx.31697.1.S1_at--365--7211Chr12:5972683..5972707 (25 bp)
GTCGACTCAACCAATATTGTCCCAA
LOC_Os12g11080
OsAffx.31697.1.S1_at--503--6531Chr12:5972785..5972805 (21 bp)
GATTCTTTTCAAGAGACCCGTGACA
LOC_Os12g11080
OsAffx.31697.1.S1_at--37--7371Chr12:5972906..5972930 (25 bp)
GTGACAAGGGTGACATTCCCCAAGA
LOC_Os12g11080
OsAffx.31697.1.S1_at--607--5671Chr12:5972917..5972941 (25 bp)
GACATTCCCCAAGATGGTACAGTGG
LOC_Os12g11080
OsAffx.31697.1.S1_at--433--6231Chr12:5972956..5972980 (25 bp)
GATGGCAACCAAGTGCCTTTGCAAT
LOC_Os12g11080
OsAffx.31697.1.S1_at--548--1691Chr12:5972963..5972987 (25 bp)
ACCAAGTGCCTTTGCAATTCAATAA
LOC_Os12g11080
OsAffx.31697.1.S1_at--1018--6451Chr12:5973027..5973051 (25 bp)
GATCAATCAATTTGGAGTGCTAGTT
LOC_Os12g11080
OsAffx.31697.1.S1_at--564--8811Chr12:5973078..5973102 (25 bp)
TGTTGTCGATAGCTCGATAGCCGAG
LOC_Os12g11080
OsAffx.31697.1.S1_at--514--6494Chr12:5973093..5973117 (25 bp)
GATAGCCGAGCACCAAGCCTCAGGA
LOC_Os12g11080
Target Sequence 
CAGGGTTCAAACCTCCTGTGAACAAAACAGGTGCCAAAAATCCATCAGCTGAAGTCGACTCAACCAATATTGTCCCAATC
ACATTAGATAGGCTGACAGCTAAGCAAAGGGATGAACTTGAACAGATGATGAGCAACGTGAAGGGCAAGTTTATGGATTC
TTTTCAAGAGACCCGTGACAAGGGTGACATTCCCCAAGATGGTACAGTGGAAGACCTTGGTGCAGATGGCAACCAAGTGC
CTTTGCAATTCAATAATTTCCAAGATAGGATCGACTATGCTGTGCAACATGCTTTGATCAATCAATTTGGAGTGCTAGTT
AATATCTTAACCAACATGGTGAAGACTGTTGTCGATAGCTCGATAGCCGAGCACCAAGCCTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis