Browse Element(s) Details


OsAffx.19606.1.S1_at

Description tigr:9640.m01045
TID=OsAffx.19606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1104010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11000Os.46314.2.S1_x_at5/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000Os.47114.1.S1_x_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000OsAffx.32036.1.S1_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000Os.10731.2.A1_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11010OsAffx.31694.1.S1_at11/1112+5936852..5938648hypothetical protein
LOC_Os12g11020NANA12+5943481..5945416retrotransposon protein, putative, unclassified
LOC_Os12g11030NANA12+5948647..5952521retrotransposon protein, putative, unclassified
LOC_Os12g11040OsAffx.19606.1.S1_at10/1112+5956927..5960227hypothetical protein
LOC_Os12g11050OsAffx.31695.1.S1_at11/1112+5961095..5962865hypothetical protein
LOC_Os12g11060OsAffx.19607.1.S1_at11/1112+5968170..5968650hypothetical protein
LOC_Os12g11070NANA12+5968953..5969336hypothetical protein
LOC_Os12g11080OsAffx.31697.1.S1_at11/1112+5972599..5974845retrotransposon protein, putative, unclassified
LOC_Os12g11090OsAffx.8338.1.S1_x_at1/1112+5975915..5976334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11100NANA12+5978774..5979511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11110NANA12+5979777..5983896retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19606.1.S1_at--904--2331Chr12:5959966..5959990 (25 bp)
AAAGCATATCTGATGGTCCAAAATT
LOC_Os12g11040
OsAffx.19606.1.S1_at--139--111Chr12:5959705..5959968 (25 bp)
ATTCGAATGATAGAAGCCCCTTCTC
LOC_Os12g11040
OsAffx.19606.1.S1_at--130--8911Chr12:5959666..5959690 (25 bp)
TGAGAGTCCATGCAACCATGCCCAG
LOC_Os12g11040
OsAffx.19606.1.S1_at--1115--1791Chr12:5959575..5959599 (25 bp)
ACCCGCTTCCTATGACAGCGTCGAG
LOC_Os12g11040
OsAffx.19606.1.S1_at--499--4571Chr12:5959434..5959458 (25 bp)
GCGCGAAAGCACTGGCTGCAGCAGC
LOC_Os12g11040
OsAffx.19606.1.S1_at--7--1531Chr12:5959267..5959407 (25 bp)
AGCATGCCAAGCAGCAGCCAGCGTC
LOC_Os12g11040
OsAffx.19606.1.S1_at--1045--1631Chr12:5959248..5959272 (25 bp)
AGCGTCCTGACTCCAGAGCAATGTT
LOC_Os12g11040
OsAffx.19606.1.S1_at--396--5952Chr12:5959233..5959257 (25 bp)
GAGCAATGTTTCTCGATTTATTTTG
LOC_Os12g11040
OsAffx.19606.1.S1_at--836--11Chr12:5959200..5959224 (25 bp)
ATGGTTTGAGAATGGGTTCAACCCA
LOC_Os12g11040
OsAffx.19606.1.S1_at--1140--5411NONE
GAACCGATTTGGATTATCTTTGTTA
NONE
OsAffx.19606.1.S1_at--218--5391Chr12:5957020..5957044 (25 bp)
GAAGCTTGCCGGTAGGCCATCAACA
LOC_Os12g11040
Target Sequence 
AAAGCATATCTGATGGTCCAAAATTCGAATGATAGAAGCCCCTTCTCCTCCCCTGACTCCCTGAGAGTCCATGCAACCAT
GCCCAGTTTCCTCCACGCGCTTGCTCTAGCTGGCCCTTCCACTGCCTGTGTCCACCACTCCCAGGCGCCAACACCCGCTT
CCTATGACAGCGTCGAGACGGAGAAGGGGCAGCGCCTGGCAGCCAACAGGAGGGCGGAGGCGGGGGCGCGGCGCGGAGCG
CCGCCGGCTGCGGAGCGCGGTCGCGTGGAGCGGTGTTGCTTCGCAGCGGCCGGGCGCGAAAGCACTGGCTGCAGCAGCAT
GCCAAGCAGCAGCCAGCGTCCTGACTCCAGAGCAATGTTTCTCGATTTATTTTGGACTGGGAATGGTTTGAGAATGGGTT
CAACCCATTTTCTTGTGTTTGTTTTGAACCGATTTGGATTATCTTTGTTACAAATGAAGAACACTGAGGTAAAAAGGCCG
GGGAAGCTTGCCGGTAGGCCATCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis