Browse Element(s) Details


OsAffx.17159.1.S1_at

Description tigr:9636.m02545
TID=OsAffx.17159.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2590011/11PsbP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25850OsAffx.17158.1.S1_s_at10/118+15610695..15612932expressed protein
LOC_Os08g25850OsAffx.17158.1.S1_at8/118+15610695..15612932expressed protein
LOC_Os08g25860OsAffx.17170.1.S1_at11/118+15616923..15621274hypothetical protein
LOC_Os08g25870NANA8+15626464..15629260retrotransposon protein, putative, unclassified
LOC_Os08g25880OsAffx.22603.1.S1_at3/118+15630769..15632947retrotransposon protein, putative, unclassified
LOC_Os08g25880OsAffx.31697.1.S1_at1/118+15630769..15632947retrotransposon protein, putative, unclassified
LOC_Os08g25890NANA8+15633340..15634122tetratricopeptide repeat, putative
LOC_Os08g25900OsAffx.17159.1.S1_x_at11/118+15635867..15638053PsbP family protein, expressed
LOC_Os08g25900OsAffx.17159.1.S1_at11/118+15635867..15638053PsbP family protein, expressed
LOC_Os08g25910NANA8+15638394..15639433hypothetical protein
LOC_Os08g25920NANA8+15640030..15640302hypothetical protein
LOC_Os08g25930OsAffx.5930.1.S1_at11/118+15641261..15642140hypothetical protein
LOC_Os08g25930Os.46467.1.S1_at1/118+15641261..15642140hypothetical protein
LOC_Os08g25940NANA8+15644963..15651118transposon protein, putative, unclassified
LOC_Os08g25950NANA8+15651760..15654987transposon protein, putative, unclassified
LOC_Os08g25960NANA8+15658138..15662567transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17159.1.S1_at--826--4751Chr08:15637689..15637713 (25 bp)
GCTGCAGGCGCTGCCATGTTTCTCT
LOC_Os08g25900
OsAffx.17159.1.S1_at--1055--9191Chr08:15637678..15637702 (25 bp)
TGCCATGTTTCTCTCTTGGCCTAAT
LOC_Os08g25900
OsAffx.17159.1.S1_at--13--751Chr08:15637674..15637698 (25 bp)
ATGTTTCTCTCTTGGCCTAATCCGG
LOC_Os08g25900
OsAffx.17159.1.S1_at--747--9511Chr08:15637668..15637691 (24 bp)
TCTCTTGGCCTAATCCGGCAGCATA
LOC_Os08g25900
OsAffx.17159.1.S1_at--28--8311Chr08:15637494..15637518 (25 bp)
GGCTAAGAAGGGTTTCTTGCCTGTC
LOC_Os08g25900
OsAffx.17159.1.S1_at--125--1451Chr08:15637489..15637513 (25 bp)
AGAAGGGTTTCTTGCCTGTCACCGA
LOC_Os08g25900
OsAffx.17159.1.S1_at--718--6831Chr08:15637483..15637507 (25 bp)
GTTTCTTGCCTGTCACCGACAAGAA
LOC_Os08g25900
OsAffx.17159.1.S1_at--256--8951Chr08:15637112..15637136 (25 bp)
TGAAGCTCTTATACGTAAGGTTTTG
LOC_Os08g25900
OsAffx.17159.1.S1_at--395--10171Chr08:15637103..15637127 (25 bp)
TATACGTAAGGTTTTGGCCGCACCT
LOC_Os08g25900
OsAffx.17159.1.S1_at--992--9771Chr08:15637097..15637121 (25 bp)
TAAGGTTTTGGCCGCACCTACGCAA
LOC_Os08g25900
OsAffx.17159.1.S1_at--5--8811Chr08:15636320..15636344 (25 bp)
TGTTGATGGACGAACTTACTACACT
LOC_Os08g25900
Target Sequence 
GCTGCAGGCGCTGCCATGTTTCTCTCTTGGCCTAATCCGGCAGCATACGCAGCAGAGGCTAAGAAGGGTTTCTTGCCTGT
CACCGACAAGAAGGATGGATACTCCTTCCTCTACCCATTTGGATGGCAGGAAGTGGTTGTTCAAGGGCAAGATAAGGTGT
ACAAAGATGTCATAGAGCCTTTGGAAAGTGTGAGTGTCAACACAATTCCAACCAGCAAGCAAGACATCCGTGAGCTTGGT
CCTCCAGATCAGGTTGCTGAAGCTCTTATACGTAAGGTTTTGGCCGCACCTACGCAAAAGACAAAGTTAATTGAAGCAAA
AGAGAATGATGTTGATGGACGAACTTACTACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis