Browse Element(s) Details


OsAffx.17255.1.S1_at

Description tigr:9636.m03093
TID=OsAffx.17255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3097011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30930Os.13573.1.S1_at11/118+18961923..18966098expressed protein
LOC_Os08g30940NANA8+18971302..18974187retrotransposon protein, putative, unclassified
LOC_Os08g30950OsAffx.22699.1.S1_x_at1/118+18974608..18977408retrotransposon protein, putative, unclassified
LOC_Os08g30950OsAffx.8201.1.S1_x_at1/118+18974608..18977408retrotransposon protein, putative, unclassified
LOC_Os08g30960NANA8+18980891..18982617hypothetical protein
LOC_Os08g30970OsAffx.17255.1.S1_at11/118+18986248..18987104hypothetical protein
LOC_Os08g30980OsAffx.29443.1.S1_at11/118+18991590..18994885hypothetical protein
LOC_Os08g30990NANA8+18997228..19004789retrotransposon protein, putative, unclassified
LOC_Os08g31000Os.17407.1.S1_at11/118+19006833..19009834expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17255.1.S1_at--924--1111Chr08:18986758..18986782 (25 bp)
AGTCTTCGGGTCTCGGCCATCTAAA
LOC_Os08g30970
OsAffx.17255.1.S1_at--843--3391Chr08:18986699..18986723 (25 bp)
CAGCTTCTAAGCAATCCTTGTGGAA
LOC_Os08g30970
OsAffx.17255.1.S1_at--982--1551Chr08:18986662..18986686 (25 bp)
AGCTAAGTGTCTGTCACTATCCCTA
LOC_Os08g30970
OsAffx.17255.1.S1_at--970--3691Chr08:18986646..18986670 (25 bp)
CTATCCCTAGCCGATATGCCAAAAA
LOC_Os08g30970
OsAffx.17255.1.S1_at--574--4331Chr08:18986615..18986639 (25 bp)
CCATGTTATCAGTTGCGACCTATTT
LOC_Os08g30970
OsAffx.17255.1.S1_at--423--7811Chr08:18986588..18986612 (25 bp)
GGTCTGATACTCTGAACTCCTTCAT
LOC_Os08g30970
OsAffx.17255.1.S1_at--785--5631Chr08:18986545..18986569 (25 bp)
GACACCAACCGTTCTATACATCAAG
LOC_Os08g30970
OsAffx.17255.1.S1_at--982--6991Chr08:18986399..18986423 (25 bp)
GTACTGGCCCAGTGACAGATCAAGA
LOC_Os08g30970
OsAffx.17255.1.S1_at--1023--531Chr08:18986370..18986394 (25 bp)
ATCGCCTTTCTCAACCTGTGGTTAG
LOC_Os08g30970
OsAffx.17255.1.S1_at--534--6051Chr08:18986344..18986368 (25 bp)
GAGATTTGTATTCTGCGGCACAACT
LOC_Os08g30970
OsAffx.17255.1.S1_at--375--3551Chr08:18986295..18986319 (25 bp)
CATCTAGCCCAAGCCATTCATGAGA
LOC_Os08g30970
Target Sequence 
AGTCTTCGGGTCTCGGCCATCTAAATTAGATGAATGGAAGGAATGGTACAGGAGAATCTCAGCTTCTAAGCAATCCTTGT
GGAAAAAGATGGGAATAGCTAAGTGTCTGTCACTATCCCTAGCCGATATGCCAAAAAATGAGTCCATGTTATCAGTTGCG
ACCTATTTCTGGTCTGATACTCTGAACTCCTTCATATTTGGTCAAGGGCCAATGACACCAACCGTTCTATACATCAAGAT
GCTAACTGGTTTAGATATCACTTCATCAGCCAACCCCATCAGGTTGAAAATCAAGAGTGAATATAAGATAAAGACCAAGG
TTGGTGGTGGCTGGTTAGGATATGCAACCAATAACATGGGTACTGGCCCAGTGACAGATCAAGAACACATCGCCTTTCTC
AACCTGTGGTTAGAGAGATTTGTATTCTGCGGCACAACTTGTGGTCCCACAGCCATCCTTCAGCATCTAGCCCAAGCCAT
TCATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis