Browse Element(s) Details


Os.13573.1.S1_at

Description gb:AK067617.1
DB_XREF= gi:32977635
TID=Os.13573.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109M02, full insert sequence.
FL= gb:AK067617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3093011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30910OsAffx.17253.1.S1_at11/118+18952663..18956655YDG/SRA domain containing protein, expressed
LOC_Os08g30930Os.13573.1.S1_at11/118+18961923..18966098expressed protein
LOC_Os08g30940NANA8+18971302..18974187retrotransposon protein, putative, unclassified
LOC_Os08g30950OsAffx.22699.1.S1_x_at1/118+18974608..18977408retrotransposon protein, putative, unclassified
LOC_Os08g30950OsAffx.8201.1.S1_x_at1/118+18974608..18977408retrotransposon protein, putative, unclassified
LOC_Os08g30960NANA8+18980891..18982617hypothetical protein
LOC_Os08g30970OsAffx.17255.1.S1_at11/118+18986248..18987104hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13573.1.S1_at--1161--8111Chr08:18965530..18965554 (25 bp)
GGACATTTGGGTGGCTTCTGGCCAA
LOC_Os08g30930
Os.13573.1.S1_at--384--8451Chr08:18965548..18965572 (25 bp)
TGGCCAAGTTCTGAAGTTGCCCATA
LOC_Os08g30930
Os.13573.1.S1_at--298--3711Chr08:18965600..18965624 (25 bp)
CTAGGCATGTATTTTGCTGTGCGCC
LOC_Os08g30930
Os.13573.1.S1_at--460--9131Chr08:18965614..18965638 (25 bp)
TGCTGTGCGCCTGTATGTGATGATT
LOC_Os08g30930
Os.13573.1.S1_at--580--5591Chr08:18965646..18965670 (25 bp)
GAAATCTCCAGGTATACTCTCCATA
LOC_Os08g30930
Os.13573.1.S1_at--550--3111Chr08:18965703..18965727 (25 bp)
AATATGTTCGTTTGGAAGCTCTGCT
LOC_Os08g30930
Os.13573.1.S1_at--592--8011Chr08:18965790..18965814 (25 bp)
GGAGGACGTCTGTGAATGCTTGTAC
LOC_Os08g30930
Os.13573.1.S1_at--439--7111Chr08:18965838..18965862 (25 bp)
GTCATCGGACTTCTTCAACAGTACT
LOC_Os08g30930
Os.13573.1.S1_at--1065--451Chr08:18965914..18965938 (25 bp)
ATCTCTCCTAGGTTGATCTCCAGGT
LOC_Os08g30930
Os.13573.1.S1_at--1158--10151Chr08:18965968..18965992 (25 bp)
TATCTCCACCTGTACCTATTATTTG
LOC_Os08g30930
Os.13573.1.S1_at--811--9971Chr08:18966040..18966064 (25 bp)
TACCAAGCGGCAGTTCTGTCTGTTT
LOC_Os08g30930
Target Sequence 
GGACATTTGGGTGGCTTCTGGCCAAGTTCTGAAGTTGCCCATAGTTTTCAACTGAGACTAGCTTAGCTAGCTAGGCATGT
ATTTTGCTGTGCGCCTGTATGTGATGATTCATAGATGAAATCTCCAGGTATACTCTCCATATTGGAGTGAGATGGCGAAA
TTTTAGACCCAAGAATATGTTCGTTTGGAAGCTCTGCTAGTTAGAAGACACGAATGTATAGGGAGCATTTGTTGCAAATT
TGCAATTTGTAAATATGGGAGGAGGACGTCTGTGAATGCTTGTACATACTGATCAGTAGAGAAAAAATGTCATCGGACTT
CTTCAACAGTACTCCCTCCGTCCCAAAAAGAATTAAGAGGGGATAAGAATTAAGAGGGGATGTGATCTCTCCTAGGTTGA
TCTCCAGGTTGATGTATGTGTTTTTGGGACGGAGGGAGTATCTCCACCTGTACCTATTATTTGGAAAATTAGCAGCGTTA
CTGCAGATTGTTTTTTTNAAAACAGGGAACTACCAAGCGGCAGTTCTGTCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis