Browse Element(s) Details


OsAffx.17252.2.S1_x_at

Description tigr:9636.m03084
TID=OsAffx.17252.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SET-domain protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3087011/11YDG/SRA domain containing protein
LOC_Os08g308505/11YDG/SRA domain containing protein, expressed
LOC_Os08g309001/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010216biological_processmaintenance of DNA methylation
GO:0016571biological_processhistone methylation
GO:0018022biological_processpeptidyl-lysine methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
GO:0046974molecular_functionhistone lysine N-methyltransferase activity (H3-K9 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17252.2.S1_x_at--1103--2912Chr08:18920276..18920300 (25 bp)
AAGGCACTAGCTGTTCATGATGGAA
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--152--1252Chr08:18920307..18920331 (25 bp)
AGTTGTATCTCAATGCTTCCTCATC
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--1137--1712Chr08:18920384..18920408 (25 bp)
ACCATGATGCTGTGCAGGAGGTTTC
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--492--7871Chr08:18920403..18920427 (25 bp)
GGTTTCAGTTTATACGCCAGGCTCT
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--262--4431Chr08:18920418..18920442 (25 bp)
GCCAGGCTCTTGTACAAGCTGTCAA
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--660--2671Chr08:18920433..18920457 (25 bp)
AAGCTGTCAAACAGGGCTCGTTGAA
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--280--2891Chr08:18920616..18920639 (24 bp)
AAGGGAGGAATCGATACCGCCGATC
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--711--1533Chr08:18940809..18940833 (25 bp)
AGCATCGTTGCTTCTGGAGGTTATC
LOC_Os08g30900
OsAffx.17252.2.S1_x_at--145--9751Chr08:18920715..18920739 (25 bp)
TAATATACACTGGTTCTGGAGGACA
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--475--2331Chr08:18920815..18920839 (25 bp)
AAAGACACCTGTCCGAGTGATCCAT
LOC_Os08g30870
OsAffx.17252.2.S1_x_at--1023--7792Chr08:18920945..18920969 (25 bp)
GGTCTAAAAGGTTCTATGGTCTTCA
LOC_Os08g30870
Target Sequence 
AAGGCACTAGCTGTTCATGATGGAACACTTAAGTTGTATCTCAATGCTTCCTCATCTGTGCAGCATCACGGGCAACATGG
AAGTGGGAATGCTGATGATAGGAGGAAAACCATGATGCTGTGCAGGAGGTTTCAGTTTATACGCCAGGCTCTTGTACAAG
CTGTCAAACAGGGCTCGTTGAAGGGAGGAATCGATACCGCCGATCATAATGGAGTGCTTGTTGCTATAAGCATCGTTGCT
TCTGGAGGTTATCCTGATAGATTGTCAAGTTCAGGTGAACTAATATACACTGGTTCTGGAGGACAGCCTACTGGTAAGAA
GAAAAGTGAGGATCAAAAGCTAGAGAGGGGAAATCTTGCCTTGAAGAATTGCATCAAGACAAAGACACCTGTCCGAGTGA
TCCATGGATTCAAAGGTCAAAATGGCAAGGATGACAGTTATTCAAGGGCTAAACAAATCTCAGCATTTACTTATGACGGG
TTGTATCATGTGGTGGATTACTGGAGAGAAGGTCTAAAAGGTTCTATGGTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17252.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis