Browse Element(s) Details


Os.33747.1.S1_at

Description gb:AK061260.1
DB_XREF= gi:32971278
TID=Os.33747.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B12, full insert sequence.
FL= gb:AK061260.1 gb:AK099189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3082011/11pre-mrna cleavage factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30780OsAffx.29441.1.S1_at10/118+18868215..18874765ABC transporter family protein
LOC_Os08g30790Os.12619.1.S1_at11/118+18879035..18883158hypersensitive-induced response protein, putative, expressed
LOC_Os08g30800Os.24246.1.A1_at11/118+18884407..18885616expressed protein
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33747.1.S1_at--454--9191Chr08:18899151..18899175 (25 bp)
TGCCTCTATCCCAGATTCATGACAA
LOC_Os08g30820
Os.33747.1.S1_at--1100--3011Chr08:18899039..18899152 (25 bp)
AATGCTCAGGTATATGGCTCAATCA
LOC_Os08g30820
Os.33747.1.S1_at--958--8311Chr08:18899024..18899048 (25 bp)
GGCTCAATCATAGCTGGAATTCCAA
LOC_Os08g30820
Os.33747.1.S1_at--463--591Chr08:18898953..18898977 (25 bp)
ATGCCACATGCCGTTAAGAGCTGTC
LOC_Os08g30820
Os.33747.1.S1_at--859--5891Chr08:18898936..18898960 (25 bp)
GAGCTGTCACGGCTTTACATGAGAC
LOC_Os08g30820
Os.33747.1.S1_at--751--4731Chr08:18898828..18898852 (25 bp)
GCTGTCCTGTATGTTGTGCAATCTT
LOC_Os08g30820
Os.33747.1.S1_at--828--10391Chr08:18898731..18898755 (25 bp)
TTTTGTAACCCTTCTGATATGGCTG
LOC_Os08g30820
Os.33747.1.S1_at--734--10251Chr08:18898680..18898704 (25 bp)
TTTGTGATTTTCATTGCCAGTCCTG
LOC_Os08g30820
Os.33747.1.S1_at--812--2391Chr08:18898618..18898642 (25 bp)
AAACATGTCTTTTCGATTGCCCAAG
LOC_Os08g30820
Os.33747.1.S1_at--1059--691Chr08:18898557..18898581 (25 bp)
ATGATCGTTAGAACAGCCACACCCG
LOC_Os08g30820
Os.33747.1.S1_at--755--211Chr08:18898513..18898537 (25 bp)
ATTTGTGTTGTACGATCCTCCATGA
LOC_Os08g30820
Target Sequence 
TGCCTCTATCCCAGATTCATGACAATGCTCAGGTATATGGCTCAATCATAGCTGGAATTCCAAACTTGTTATCGAAGTTC
TCCATGAACATCATCAGTGACTGAGATGCATGCCACATGCCGTTAAGAGCTGTCACGGCTTTACATGAGACTAGCATATT
CGATCTAGTAGTAGAACATGTTGTGTATAAACTGTACCTGGTAGAAATATAAACTTTGGAATTCACGAGCTGGTGCTGTC
CTGTATGTTGTGCAATCTTTTTTTTTTTCTTTTACTGTATAGAGGTAATGTATTGTATTTGTATATGTTATCAACACCAG
GTGTGGTGTTATTTTTGTAACCCTTCTGATATGGCTGTAGAAATGAAACAGTTCTGTACAAGATTTGTGATTTTCATTGC
CAGTCCTGNCAAAAGCTGAACCAAGCACACCTCGCTGCGAGGACCAAACATGTCTTTTCGATTGCCCAAGCAAAAGATAG
AGATAGAACTAAACAAACTTTAAAATATGATCGTTAGAACAGCCACACCCGGCACAACCTTTCGAAGAACATTTGTGTTG
TACGATCCTCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis