Browse Element(s) Details


Os.24246.1.A1_at

Description gb:AK072742.1
DB_XREF= gi:32982765
TID=Os.24246.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139O15, full insert sequence.
FL= gb:AK072742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3080011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30770Os.18695.1.S1_at11/118+18860450..18866114ABC transporter family protein, putative, expressed
LOC_Os08g30780OsAffx.29441.1.S1_at10/118+18868215..18874765ABC transporter family protein
LOC_Os08g30790Os.12619.1.S1_at11/118+18879035..18883158hypersensitive-induced response protein, putative, expressed
LOC_Os08g30800Os.24246.1.A1_at11/118+18884407..18885616expressed protein
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24246.1.A1_at--797--4391Chr08:18884872..18884896 (25 bp)
GCCAAGCTGCGAGCCAAGCTGGAGA
LOC_Os08g30800
Os.24246.1.A1_at--709--7371Chr08:18884712..18884736 (25 bp)
GTGATCTGGGATTCTTAGGCAGTTC
LOC_Os08g30800
Os.24246.1.A1_at--245--3671Chr08:18884699..18884723 (25 bp)
CTTAGGCAGTTCTTGCAATTGGACA
LOC_Os08g30800
Os.24246.1.A1_at--900--5671Chr08:18884649..18884673 (25 bp)
GACATTTGCAGGATTTGCAGCTAGT
LOC_Os08g30800
Os.24246.1.A1_at--398--1571Chr08:18884631..18884655 (25 bp)
AGCTAGTGACGATCTGTTTCTGAAT
LOC_Os08g30800
Os.24246.1.A1_at--343--6831Chr08:18884616..18884640 (25 bp)
GTTTCTGAATGGAAGCTTTGGTACA
LOC_Os08g30800
Os.24246.1.A1_at--398--5591Chr08:18884591..18884615 (25 bp)
GAAATTTTTGCCTTCTTACGATGAT
LOC_Os08g30800
Os.24246.1.A1_at--480--4451Chr08:18884582..18884606 (25 bp)
GCCTTCTTACGATGATGATGGTCTC
LOC_Os08g30800
Os.24246.1.A1_at--1054--811Chr08:18884565..18884589 (25 bp)
ATGGTCTCAAGTCGTCTTTGCTGAA
LOC_Os08g30800
Os.24246.1.A1_at--948--10271Chr08:18884549..18884573 (25 bp)
TTTGCTGAAGACCATGGCGCCATTG
LOC_Os08g30800
Os.24246.1.A1_at--543--5851Chr08:18884540..18884564 (25 bp)
GACCATGGCGCCATTGAGTGTTGCT
LOC_Os08g30800
Target Sequence 
GCCAAGCTGCGAGCCAAGCTGGAGAAGCTGGACGCCAAGATCGACGACCTCAAGGCCAAGAAGCAGGAGATCGTGGCCCG
ACTCGTCCAGCTCGAGGAGGGTGCGACGGCAAATGCTGCTGCTGCAGATGCGGCACCACCTGCCAGCGGCTGAGGAGGAG
GTGATCTGGGATTCTTAGGCAGTTCTTGCAATTGGACAAGNGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTG
CAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTC
GTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24246.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis