Browse Element(s) Details


Os.18695.1.S1_at

Description gb:AK122145.1
DB_XREF= gi:37991791
TID=Os.18695.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033137O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033137O18, full insert sequence.
FL= gb:AK122145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3077011/11ABC transporter family protein, putative, expressed
LOC_Os04g354201/11ATP-dependent DNA helicase, RecQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30750Os.14491.2.S1_x_at5/118+18836176..18843812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30750Os.47463.1.S1_x_at4/118+18836176..18843812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30760OsAffx.21465.1.S1_x_at1/118+18845099..18848413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30770Os.18695.1.S1_at11/118+18860450..18866114ABC transporter family protein, putative, expressed
LOC_Os08g30780OsAffx.29441.1.S1_at10/118+18868215..18874765ABC transporter family protein
LOC_Os08g30790Os.12619.1.S1_at11/118+18879035..18883158hypersensitive-induced response protein, putative, expressed
LOC_Os08g30800Os.24246.1.A1_at11/118+18884407..18885616expressed protein
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006974biological_processresponse to DNA damage stimulus
GO:0003678molecular_functionDNA helicase activity
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18695.1.S1_at--507--6091Chr08:18865564..18865588 (25 bp)
GAGTCAATGTGATCGCGTAAATAAT
LOC_Os08g30770
Os.18695.1.S1_at--208--9251Chr08:18865618..18865642 (25 bp)
TCCTTCATAGGATCATGTGTTGTAT
LOC_Os08g30770
Os.18695.1.S1_at--966--4831Chr08:18865663..18865687 (25 bp)
GCTAACCTTTACTTGGCATTGTGAT
LOC_Os08g30770
Os.18695.1.S1_at--560--6871Chr08:18865750..18865774 (25 bp)
GTATAACACCAATTAGGCCTTTTTG
LOC_Os08g30770
Os.18695.1.S1_at--186--7655Chr08:18865873..18865897 (25 bp)
GGGATTAACCGAACATGGCCTTAGT
LOC_Os08g30770
Os.18695.1.S1_at--268--2111Chr08:18865885..18865909 (25 bp)
ACATGGCCTTAGTGGTAGTTGATTT
LOC_Os08g30770
Os.18695.1.S1_at--503--10271Chr08:18865908..18865932 (25 bp)
TTTGACTAAAACCAGCTGAGCAGAA
LOC_Os08g30770
Os.18695.1.S1_at--366--10351Chr08:18865959..18865983 (25 bp)
TTTTTTCCCGCAAACAGAAAGCTAT
LOC_Os08g30770
Os.18695.1.S1_at--880--1411Chr08:18866027..18866051 (25 bp)
AGAAAGCACATTACCTAGTCCCTAC
LOC_Os08g30770
Os.18695.1.S1_at--1130--1131Chr08:18866043..18866067 (25 bp)
AGTCCCTACTTGTATCTTTCTTTGA
LOC_Os08g30770
Os.18695.1.S1_at--223--151Chr08:18866071..18866095 (25 bp)
ATTATCCTTCAATGACATCCTGAAC
LOC_Os08g30770
Target Sequence 
GAGTCAATGTGATCGCGTAAATAATATTATGGATCGATAGGTGGTTATTTTTTTTCCTTCATAGGATCATGTGTTGTATA
TAGTTTGTTTGAACTATATGCTAACCTTTACTTGGCATTGTGATTGAGTTGTTCATGTAGTATGGTAAAGTTGTATATTT
AGCAACCATGGAATTCATATTGTAATGTATAACACCAATTAGGCCTTTTTGGGTTTAGAGGGGGTTGAAGGGGATTTGAG
GGATTTGAGGGGGAATAATTCCACATCACAATAGGTGTGCAATAAATCCCCTCCAATCCCTCCCTCTTGGGGATTAACCG
AACATGGCCTTAGTGGTAGTTGATTTTGACTAAAACCAGCTGAGCAGAATGTGCATATTTAAAACTATATCGGGTTTTTT
TCCCGCAAACAGAAAGCTATATGCGATTTTATTTTATTTAGTAAAATGTTGAAAACAATGTTAAGAAAGCACATTACCTA
GTCCCTACTTGTATCTTTCTTTGATTCATTATCCTTCAATGACATCCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis