Browse Element(s) Details


Os.12619.1.S1_at

Description gb:AF374475.1
DB_XREF= gi:14150731
GEN=RHIR1
TID=Os.12619.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12619 (NCBI UniGene Cluster)
DEF=Oryza sativa hypersensitive-induced response protein (RHIR1) mRNA, complete cds.
PROD=hypersensitive-induced response protein
FL= gb:AK065554.1 gb:AF374475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3079011/11hypersensitive-induced response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30770Os.18695.1.S1_at11/118+18860450..18866114ABC transporter family protein, putative, expressed
LOC_Os08g30780OsAffx.29441.1.S1_at10/118+18868215..18874765ABC transporter family protein
LOC_Os08g30790Os.12619.1.S1_at11/118+18879035..18883158hypersensitive-induced response protein, putative, expressed
LOC_Os08g30800Os.24246.1.A1_at11/118+18884407..18885616expressed protein
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12619.1.S1_at--596--571Chr08:18882492..18882516 (25 bp)
ATCCAAGTACTTGGCTGGTCTGGGT
LOC_Os08g30790
Os.12619.1.S1_at--1126--791Chr08:18882545..18882569 (25 bp)
ATGGGCTGAGAGACAGTGTTCTTGC
LOC_Os08g30790
Os.12619.1.S1_at--421--10591Chr08:18882571..18882595 (25 bp)
TTCTCCGAGAACGTGCCTGGGACCT
LOC_Os08g30790
Os.12619.1.S1_at--200--8651Chr08:18882588..18882612 (25 bp)
TGGGACCTCTGCCAAGGATGTCATG
LOC_Os08g30790
Os.12619.1.S1_at--766--10071Chr08:18882615..18882639 (25 bp)
TATGGTTCTGGTTACGCAATACTTC
LOC_Os08g30790
Os.12619.1.S1_at--262--7891Chr08:18882624..18882648 (25 bp)
GGTTACGCAATACTTCGACACCATG
LOC_Os08g30790
Os.12619.1.S1_at--354--1271Chr08:18882653..18882677 (25 bp)
AGATAGGAGCCTCATCCAAGTCCTC
LOC_Os08g30790
Os.12619.1.S1_at--871--3531Chr08:18882665..18882689 (25 bp)
CATCCAAGTCCTCTTCAGTGTTCAT
LOC_Os08g30790
Os.12619.1.S1_at--95--9671Chr08:18882693..18882717 (25 bp)
TCACGGGCCAGGTGCCGTCAAAGAT
LOC_Os08g30790
Os.12619.1.S1_at--927--4491Chr08:18882706..18882730 (25 bp)
GCCGTCAAAGATATCGCTGCGCAGA
LOC_Os08g30790
Os.12619.1.S1_at--447--6031Chr08:18882734..18882758 (25 bp)
GAGATGGTCAGCTCCAGGCCAAATT
LOC_Os08g30790
Target Sequence 
ATCCAAGTACTTGGCTGGTCTGGGTATCGCAAGGCAGCGTCAGGCTATAGTGGATGGGCTGAGAGACAGTGTTCTTGCNT
TCTCCGAGAACGTGCCTGGGACCTCTGCCAAGGATGTCATGGATATGGTTCTGGTTACGCAATACTTCGACACCATGAAG
GAGATAGGAGCCTCATCCAAGTCCTCTTCAGTGTTCATCCCTCACGGGCCAGGTGCCGTCAAAGATATCGCTGCGCAGAT
AAGAGATGGTCAGCTCCAGGCCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis