Browse Element(s) Details


OsAffx.5994.1.S1_at

Description tigr:9636.m03081
TID=OsAffx.5994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3084010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30790Os.12619.1.S1_at11/118+18879035..18883158hypersensitive-induced response protein, putative, expressed
LOC_Os08g30800Os.24246.1.A1_at11/118+18884407..18885616expressed protein
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5994.1.S1_at--801--8711Chr08:18905549..18905573 (25 bp)
TGTCGAGGTACCCAAGCCGCAGAGC
LOC_Os08g30840
OsAffx.5994.1.S1_at--220--4651NONE
GCGTCATGGACCAAGGTGATCAGAC
NONE
OsAffx.5994.1.S1_at--147--8851Chr08:18904664..18904688 (25 bp)
TGATCAGACCGAAGTTGCACACAAC
LOC_Os08g30840
OsAffx.5994.1.S1_at--798--9011Chr08:18904649..18904673 (25 bp)
TGCACACAACGGAACAATGAAGTCG
LOC_Os08g30840
OsAffx.5994.1.S1_at--358--6271Chr08:18904399..18904631 (25 bp)
GATGTCGGAGACACCAACGCACGAG
LOC_Os08g30840
OsAffx.5994.1.S1_at--233--5991Chr08:18904392..18904624 (25 bp)
GAGACACCAACGCACGAGATCACAG
LOC_Os08g30840
OsAffx.5994.1.S1_at--128--6051Chr08:18904377..18904401 (25 bp)
GAGATCACAGCAGAGACGATGGCTA
LOC_Os08g30840
OsAffx.5994.1.S1_at--704--5771Chr08:18904363..18904387 (25 bp)
GACGATGGCTAGTCAACAGGGTCAA
LOC_Os08g30840
OsAffx.5994.1.S1_at--515--2491Chr08:18904349..18904373 (25 bp)
AACAGGGTCAAAAGGAGGCACTGCA
LOC_Os08g30840
OsAffx.5994.1.S1_at--1004--2311Chr08:18904323..18904347 (25 bp)
AAAGTGGTCACAGGGCGCTCGGCCA
LOC_Os08g30840
OsAffx.5994.1.S1_at--788--4391Chr08:18904302..18904326 (25 bp)
GCCAACGACTGTCCAGCCAGAGATG
LOC_Os08g30840
Target Sequence 
TGTCGAGGTACCCAAGCCGCAGAGCGCGCATGGGGCGCCGTAGAGTGGTCGTGGACGCACAGGAGGGCGTCATGGACCAA
GGTGATCAGACCGAAGTTGCACACAACGGAACAATGAAGTCGAAGCCGAAGTTGATGCCGATGTCGGAGACACCAACGCA
CGAGATCACAGCAGAGACGATGGCTAGTCAACAGGGTCAAAAGGAGGCACTGCAGAAAGTGGTCACAGGGCGCTCGGCCA
ACGACTGTCCAGCCAGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis