Browse Element(s) Details


OsAffx.29442.1.S1_s_at

Description tigr:9636.m03086
TID=OsAffx.29442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=translation elongation factor ts, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3088411/11ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30910OsAffx.17253.1.S1_at11/118+18952663..18956655YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29442.1.S1_s_at--163--4331Chr08:18932458..18932482 (25 bp)
CCATGATTGGGCTTCTGTTTCGCGC
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--1093--7671Chr08:18932415..18932439 (25 bp)
GGGTTACTCTTATTCAGCGTTCCAG
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--1020--911Chr08:18932392..18932416 (25 bp)
AGGCTCACCTTTCGAGCAGCAATGT
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--518--5051Chr08:18932377..18932401 (25 bp)
GCAGCAATGTCGATCAAAGCGCCAC
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--33--2371Chr08:18932362..18932386 (25 bp)
AAAGCGCCACACTTCTCAGGAGATT
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--931--1251Chr08:18932342..18932366 (25 bp)
AGATTCAGCTCCGAAGTTCCTGCGT
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--128--5791Chr08:18932280..18932304 (25 bp)
GACGAGCGCTCCAATCAAAGATGTG
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--1100--5291Chr08:18932256..18932280 (25 bp)
GAAGGCTTCCTTAGTTAGTTGCAAC
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--215--7891Chr08:18932094..18932118 (25 bp)
GGTTCTTGCTGCCAAAAAGTCTTCA
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--296--2331Chr08:18932079..18932103 (25 bp)
AAAGTCTTCACGGACTGCAGCTGAA
LOC_Os08g30884
OsAffx.29442.1.S1_s_at--706--2871Chr08:18932025..18932049 (25 bp)
AAGGGCCGCTGTGGTTGAGCTTAAC
LOC_Os08g30884
Target Sequence 
CCATGATTGGGCTTCTGTTTCGCGCCCAACAACATTCTGCTCGGGGTTACTCTTATTCAGCGTTCCAGGCTCACCTTTCG
AGCAGCAATGTCGATCAAAGCGCCACACTTCTCAGGAGATTCAGCTCCGAAGTTCCTGCGTCGGAGCAAATGAATCTCAT
CAAACAGCTGAGGGAGAGGACGAGCGCTCCAATCAAAGATGTGAAGGCTTCCTTAGTTAGTTGCAACTGGGATATTGATG
TTGCACAGAAGGACCTAAGGAAGAGAGGGGTGGTTCTTGCTGCCAAAAAGTCTTCACGGACTGCAGCTGAAGGTTTGCTT
GCTATTGCACAAGATGAGAAAAGGGCCGCTGTGGTTGAGCTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29442.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis