Browse Element(s) Details


Os.52835.1.S1_at

Description gb:AK069520.1
DB_XREF= gi:32979544
TID=Os.52835.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022E24, full insert sequence.
FL= gb:AK069520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3090010/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30910OsAffx.17253.1.S1_at11/118+18952663..18956655YDG/SRA domain containing protein, expressed
LOC_Os08g30930Os.13573.1.S1_at11/118+18961923..18966098expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52835.1.S1_at--1085--9871Chr08:18941804..18941828 (25 bp)
TACATAAGCCAGTCTAGTCTCTCTC
LOC_Os08g30900
Os.52835.1.S1_at--932--10691Chr08:18942926..18942946 (21 bp)
TTGCCAGGCCTGATTCTGGAGTTCA
LOC_Os08g30900
Os.52835.1.S1_at--446--6091Chr08:18942972..18942996 (25 bp)
GAGTCCCCATCTATGCATGATGCAG
LOC_Os08g30900
Os.52835.1.S1_at--990--4671Chr08:18942993..18943017 (25 bp)
GCAGGAAAACCGGTTCATGTCTTGA
LOC_Os08g30900
Os.52835.1.S1_at--635--2771Chr08:18943017..18943041 (25 bp)
AAGACCTGGCCATCAAATTCACTAC
LOC_Os08g30900
Os.52835.1.S1_at--7--3151Chr08:18943032..18943056 (25 bp)
AATTCACTACTATCAGACTTCGTCA
LOC_Os08g30900
Os.52835.1.S1_at--40--3111Chr08:18943056..18943180 (25 bp)
AATTTCTCGGGTCACCACGGAGGAG
LOC_Os08g30900
Os.52835.1.S1_at--383--1571Chr08:18943183..18943207 (25 bp)
AGCTACTGAATTTTCCGAGTTCTTC
LOC_Os08g30900
Os.52835.1.S1_at--416--2371NONE
AAACCATAGTTCGAGCGTGTGCTGA
NONE
Os.52835.1.S1_at--1131--871Chr08:18943298..18943322 (25 bp)
AGGCCTTGCTCGTACAGTGCATGAG
LOC_Os08g30900
Os.52835.1.S1_at--791--2631Chr08:18943446..18943470 (25 bp)
AACCTAGATAGGTGCTCAACCGGCA
LOC_Os08g30900
Target Sequence 
TACATAAGCCAGTCTAGTCTCTCTCTTGCTTGCCAGGCCTGATTCTGGAGTTCAGAGCAAGTTGGATATCTGTGACCATG
AGTCCCCATCTATGCATGATGCAGGAAAACCGGTTCATGTCTTGAAGACCTGGCCATCAAATTCACTACTATCAGACTTC
GTCAATTTCTCGGGTCACCACGGAGGAGAAAGCTACTGAATTTTCCGAGTTCTTCGCCGGTGAAGGGTTCAAACCATAGT
TCGAGCGTGTGCTGAAGCAAAGCCTGGAGAGGGTCCGGATCAGCCCGAGATGGATCGAGAGCATCAGGCCTTGCTCGTAC
AGTGCATGAGCTGCAGCAGCAGGAAATGTAACTTTCTGGGCTAAGCTAGAAGATTTTACACGCATGGAAGTTCGTACAAA
AATGTTCTTGGAAAGGTTGTGCGGTTGGGCCAGGTGTGGCCACTACTAAAAAAAACCTAGATAGGTGCTCAACCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis