Browse Element(s) Details


OsAffx.17263.1.S1_at

Description tigr:9636.m03114
TID=OsAffx.17263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3118011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31150NANA8+19116801..19124338retrotransposon protein, putative, unclassified
LOC_Os08g31160NANA8+19124570..19125088hypothetical protein
LOC_Os08g31170OsAffx.29448.1.S1_at11/118+19133989..19134816C1-like domain containing protein
LOC_Os08g31180OsAffx.17263.1.S1_at11/118+19144478..19144918hypothetical protein
LOC_Os08g31190NANA8+19145842..19148441transposon protein, putative, Mutator sub-class
LOC_Os08g31200Os.47907.1.S1_at1/118+19159979..19162067UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g31210OsAffx.17264.1.S1_s_at11/118+19166286..19168841hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17263.1.S1_at--647--7911Chr08:19144635..19144691 (25 bp)
GGTTGTTGTCGAACACCGTATGCGT
LOC_Os08g31180
OsAffx.17263.1.S1_at--258--1791Chr08:19144681..19144705 (25 bp)
ACCGTATGCGTGCAGATTTTTCATG
LOC_Os08g31180
OsAffx.17263.1.S1_at--332--7491Chr08:19144705..19144729 (25 bp)
GTGGGAATCTCAGTATGAGCAGTAT
LOC_Os08g31180
OsAffx.17263.1.S1_at--524--3451Chr08:19144715..19144739 (25 bp)
CAGTATGAGCAGTATTTGGCGGATG
LOC_Os08g31180
OsAffx.17263.1.S1_at--693--9331Chr08:19144741..19144765 (25 bp)
TCGCGTAGGAGTGGGACATCAGTCA
LOC_Os08g31180
OsAffx.17263.1.S1_at--361--411Chr08:19144758..19144782 (25 bp)
ATCAGTCAGGGCGAGAAAGTCATGT
LOC_Os08g31180
OsAffx.17263.1.S1_at--298--2331Chr08:19144773..19144797 (25 bp)
AAAGTCATGTTGAAGCAATGGCATC
LOC_Os08g31180
OsAffx.17263.1.S1_at--915--7691Chr08:19144809..19144833 (25 bp)
GGGTCTCAGAATTGAAGGGATGCAA
LOC_Os08g31180
OsAffx.17263.1.S1_at--1059--6311Chr08:19144827..19144851 (25 bp)
GATGCAATGCAGTGGGACAGATTTT
LOC_Os08g31180
OsAffx.17263.1.S1_at--416--7471Chr08:19144838..19144862 (25 bp)
GTGGGACAGATTTTAGTGTACATTA
LOC_Os08g31180
OsAffx.17263.1.S1_at--37--7451Chr08:19144853..19144877 (25 bp)
GTGTACATTAGAGTTTTGCAAGCTT
LOC_Os08g31180
Target Sequence 
GGTTGTTGTCGAACACCGTATGCGTGCAGATTTTTCATGTGGGAATCTCAGTATGAGCAGTATTTGGCGGATGGTCGCGT
AGGAGTGGGACATCAGTCAGGGCGAGAAAGTCATGTTGAAGCAATGGCATCTATGGGGTTTGGGGTCTCAGAATTGAAGG
GATGCAATGCAGTGGGACAGATTTTAGTGTACATTAGAGTTTTGCAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis